Cluster no. 241

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Cluster is part of supercluster: 140

Cluster characteristics:

size 500
size_real 500
ecount 2755
supercluster 140
annotations_summary
pair_completeness 0.54320987654321
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.002
satellite_probability 1.65508917325132e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 3
S5 154
S4 164
S7 0
S9 0
S6 178
S2 1
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.0 3.5 2.5 0 0 1.5 0.0 0 0
S5 3.5 258.0 292.0 0 0 284.0 0.0 0 0
S4 2.5 292.0 346.0 0 0 337.0 0.0 0 0
S7 0.0 0.0 0.0 0 0 0.0 0.0 0 0
S9 0.0 0.0 0.0 0 0 0.0 0.0 0 0
S6 1.5 284.0 337.0 0 0 309.0 0.5 0 0
S2 0.0 0.0 0.0 0 0 0.5 0.0 0 0
S1 0.0 0.0 0.0 0 0 0.0 0.0 0 0
S3 0.0 0.0 0.0 0 0 0.0 0.0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 38.100 1.360 0.829 NA NA 0.522 0.00 NA NA
S5 1.360 1.010 0.983 NA NA 1.000 0.00 NA NA
S4 0.829 0.983 0.998 NA NA 1.020 0.00 NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 0.522 1.000 1.020 NA NA 0.981 2.96 NA NA
S2 0.000 0.000 0.000 NA NA 2.960 0.00 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
11700 3 0.0397
12000 3 0.0397
2230 2 0.0252
4410 2 0.0263
9920 2 0.0263
12500 2 0.0265
60600 2 0.0267
3 1 0.000345
15 1 0.000426
33 1 0.000546
34 1 8e-04
37 1 0.00122
82 1 0.00142
88 1 0.00138
90 1 0.00134
95 1 0.00161
112 1 0.00245
141 1 0.00399
252 1 0.00647
428 1 0.0115
664 1 0.0123
829 1 0.012
2010 1 0.013
7380 1 0.0131
12500 1 0.0134
15100 1 0.0132
16100 1 0.0132
17900 1 0.0132
23100 1 0.0133
24700 1 0.0133
28600 1 0.0133
29700 1 0.0133
43900 1 0.0133
49200 1 0.0133