Cluster no. 240

Cluster no. 240

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Cluster is part of supercluster: 139

Cluster characteristics:

size	503
size_real	503
ecount	6643
supercluster	139
annotations_summary	0.20% organelle/plastid
pair_completeness	0.665562913907285
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.117296222664016
satellite_probability	3.68644673934982e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	161
S4	149
S7	2
S9	0
S6	191
S2	0
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0	0.0	0.0	0	0	0	0	0
S5	0	749	636.0	6.0	0	817	0	0	0
S4	0	636	548.0	9.5	0	692	0	0	0
S7	0	6	9.5	0.0	0	8	0	0	0
S9	0	0	0.0	0.0	0	0	0	0	0
S6	0	817	692.0	8.0	0	1010	0	0	0
S2	0	0	0.0	0.0	0	0	0	0	0
S1	0	0	0.0	0.0	0	0	0	0	0
S3	0	0	0.0	0.0	0	0	0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	1.020	1.020	0.768	NA	0.973	NA	NA	NA
S4	NA	1.020	1.020	1.420	NA	0.965	NA	NA	NA
S7	NA	0.768	1.420	0.000	NA	0.896	NA	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	NA	0.973	0.965	0.896	NA	1.050	NA	NA	NA
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.002

clusters with similarity:

Cluster	Number of similarity hits

1

103

clusters connected through mates:

Cluster	Number of shared read pairs	k

1	46	0.026
35	8	0.00779
10600	2	0.0381
36700	2	0.0388
62300	2	0.0388
34	1	0.000815
93	1	0.00142
141	1	0.00441
149	1	0.0059
8380	1	0.0194
14400	1	0.0192
32400	1	0.0194
60200	1	0.0194
61300	1	0.0194

CL240 ----> CL1

No. of shared pairs: :46