Cluster no. 239

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Cluster is part of supercluster: 138

Cluster characteristics:

size 504
size_real 504
ecount 4352
supercluster 138
annotations_summary 0.20% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness 0.344
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00198412698412698
satellite_probability 9.7548493215956e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 1
S4 3
S7 1
S9 1
S6 0
S2 175
S1 170
S3 153
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0 0.0 0.0 0 0.0 0.0 0.0
S5 0 0.0 0 0.0 0.0 0 2.5 0.5 1.5
S4 0 0.0 0 0.0 0.0 0 9.0 10.0 7.0
S7 0 0.0 0 0.0 0.0 0 1.0 0.5 0.5
S9 0 0.0 0 0.0 0.0 0 5.5 7.5 3.0
S6 0 0.0 0 0.0 0.0 0 0.0 0.0 0.0
S2 0 2.5 9 1.0 5.5 0 499.0 528.0 432.0
S1 0 0.5 10 0.5 7.5 0 528.0 559.0 450.0
S3 0 1.5 7 0.5 3.0 0 432.0 450.0 377.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.000 0.000 0.000 0.000 NA 1.640 0.311 1.140
S4 NA 0.000 0.000 0.000 0.000 NA 1.020 1.080 0.922
S7 NA 0.000 0.000 0.000 0.000 NA 1.470 0.699 0.856
S9 NA 0.000 0.000 0.000 0.000 NA 1.010 1.310 0.642
S6 NA NA NA NA NA NA NA NA NA
S2 NA 1.640 1.020 1.470 1.010 NA 0.996 1.000 1.000
S1 NA 0.311 1.080 0.699 1.310 NA 1.000 1.000 0.991
S3 NA 1.140 0.922 0.856 0.642 NA 1.000 0.991 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RT Ale Ty1-RT 1 0.002

clusters with similarity:

Cluster Number of similarity hits
137 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
137 21 0.0814
806 3 0.0233
1210 3 0.0238
4040 2 0.0158
9900 2 0.0161
43000 2 0.0161
57000 2 0.0161
60100 2 0.0161
7 1 0.000641
30 1 0.000883
42 1 0.00142
46 1 0.000967
85 1 0.00159
96 1 0.00149
98 1 0.00186
108 1 0.00188
168 1 0.00234
2880 1 0.00803
10600 1 0.008
11600 1 0.00803
15500 1 0.00803
15600 1 0.00803
17700 1 0.00803
18500 1 0.00803
22400 1 0.00806
24200 1 0.00806
29600 1 0.00806
33900 1 0.00806
45000 1 0.00806
46000 1 0.00806
49300 1 0.00806
52700 1 0.00806
53200 1 0.00806
54000 1 0.00806
54300 1 0.00806
56200 1 0.00806
59900 1 0.00806
60000 1 0.00806
61400 1 0.00806
62800 1 0.00806

CL239 ----> CL137

image

No. of shared pairs: :21