Cluster no. 238

Cluster no. 238

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Cluster is part of supercluster: 12

Cluster characteristics:

size	505
size_real	505
ecount	3484
supercluster	12
annotations_summary
pair_completeness	0.422535211267606
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00198019801980198
satellite_probability	5.57078696969618e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	161
S4	159
S7	0
S9	0
S6	184
S2	1
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0	0	0	0	0	0	0	0
S5	0	497	317	0	0	452	4	0	0
S4	0	317	266	0	0	345	2	0	0
S7	0	0	0	0	0	0	0	0	0
S9	0	0	0	0	0	0	0	0	0
S6	0	452	345	0	0	471	5	0	0
S2	0	4	2	0	0	5	0	0	0
S1	0	0	0	0	0	0	0	0	0
S3	0	0	0	0	0	0	0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	1.070	0.935	NA	NA	0.974	0.998	NA	NA
S4	NA	0.935	1.070	NA	NA	1.020	0.681	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	NA	0.974	1.020	NA	NA	1.010	1.240	NA	NA
S2	NA	0.998	0.681	NA	NA	1.240	0.000	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

41	52
37	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

41	79	0.114
37	30	0.0355
3590	3	0.0283
4180	3	0.0283
11300	2	0.0192
51200	2	0.0193
1	1	0.000549
80	1	0.00119
2030	1	0.00948
2500	1	0.00957
8920	1	0.00957
10600	1	0.00957
14000	1	0.00962
15000	1	0.00962
27600	1	0.00966
32300	1	0.00966
36400	1	0.00966
44600	1	0.00966
48100	1	0.00966
65500	1	0.00966
65900	1	0.00966
69000	1	0.00966

CL238 ----> CL41

No. of shared pairs: :79

CL238 ----> CL37

No. of shared pairs: :30