Cluster no. 237

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Cluster is part of supercluster: 137

Cluster characteristics:

size 510
size_real 510
ecount 35701
supercluster 137
annotations_summary
pair_completeness 0.550151975683891
pbs_score 0.0
TR_score 0.3636678200692042
TR_monomer_length 89.0
loop_index 0.884313725490196
satellite_probability 0.0118873835434094
consensus 
AATTATTTATACAAAAATAATTTCTAATAAATTAATTAAATTATTTATACTTAAATAATTTTCTAATAAATTTATTCCTT
TAATTTATC

  

  

    TAREAN_annotation
    Putative satellite (low confidence)
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S8
      0
  

  

    S5
    157
  

  

    S4
    171
  

  

    S7
      0
  

  

    S9
      0
  

  

    S6
    180
  

  

    S2
      2
  

  

    S1
      0
  

  

    S3
      0
  

 


 
 comparative analysis - number of edges between species:



  

    
    S8
    S5
    S4
    S7
    S9
    S6
    S2
    S1
    S3
  

   

    S8
    0
       0
       0
    0
    0
       0.0
     0.0
    0
    0
  

  

    S5
    0
    3320
    3710
    0
    0
    3860.0
    51.0
    0
    0
  

  

    S4
    0
    3710
    4110
    0
    0
    4210.0
    59.0
    0
    0
  

  

    S7
    0
       0
       0
    0
    0
       0.0
     0.0
    0
    0
  

  

    S9
    0
       0
       0
    0
    0
       0.0
     0.0
    0
    0
  

  

    S6
    0
    3860
    4210
    0
    0
    4370.0
    52.5
    0
    0
  

  

    S2
    0
      51
      59
    0
    0
      52.5
     1.0
    0
    0
  

  

    S1
    0
       0
       0
    0
    0
       0.0
     0.0
    0
    0
  

  

    S3
    0
       0
       0
    0
    0
       0.0
     0.0
    0
    0
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S8
    S5
    S4
    S7
    S9
    S6
    S2
    S1
    S3
  

   

    S8
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
  

  

    S5
    NA
    0.989
    1.000
    NA
    NA
    1.010
    1.020
    NA
    NA
  

  

    S4
    NA
    1.000
    1.000
    NA
    NA
    0.995
    1.070
    NA
    NA
  

  

    S7
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
  

  

    S9
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
  

  

    S6
    NA
    1.010
    0.995
    NA
    NA
    0.999
    0.917
    NA
    NA
  

  

    S2
    NA
    1.020
    1.070
    NA
    NA
    0.917
    1.340
    NA
    NA
  

  

    S1
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
  

  

    S3
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
  

 


 
 protein domains:



No protein domains detected



protein domains:


  





 
 Reads annotation summary



No similarity hits to repeat databases found


 
 clusters with similarity:



  

    
      



 

    Cluster
    Number of similarity hits
  

      

   		
 

 

   
     

       



  

    25
    267
  

  

    39
    73
  

  

    66
    20
  

       

     

  		
 




 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    25
    77
    0.093
  

  

    39
    49
    0.0475
  

  

    66
    11
    0.0127
  

  

    2
    1
    0.000617
  

  

    3
    1
    0.000345
  

  

    24
    1
    0.00145
  

  

    26
    1
    0.001
  

  

    47
    1
    0.000976
  

  

    109
    1
    0.00187
  

  

    145
    1
    0.00494
  

       

     

  		
 





  
CL237 ----> CL25

       image
     
 No. of shared pairs: :77





  
CL237 ----> CL39

       image
     
 No. of shared pairs: :49





  
CL237 ----> CL66

       image
     
 No. of shared pairs: :11