Cluster no. 236

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Cluster is part of supercluster: 136

Cluster characteristics:

size 510
size_real 510
ecount 1586
supercluster 136
annotations_summary 0.20% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.491228070175439
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.123529411764706
satellite_probability 7.36359127013643e-15
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 122
S4 177
S7 0
S9 2
S6 207
S2 0
S1 1
S3 1
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0.0 0 0.0 0.0 0 0.0 0.0
S5 0 83.0 124.0 0 2.0 152.0 0 0.5 0.5
S4 0 124.0 244.0 0 4.5 214.0 0 1.0 0.0
S7 0 0.0 0.0 0 0.0 0.0 0 0.0 0.0
S9 0 2.0 4.5 0 0.0 4.0 0 0.0 0.0
S6 0 152.0 214.0 0 4.0 247.0 0 2.0 1.5
S2 0 0.0 0.0 0 0.0 0.0 0 0.0 0.0
S1 0 0.5 1.0 0 0.0 2.0 0 0.0 0.0
S3 0 0.5 0.0 0 0.0 1.5 0 0.0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 1.010 0.925 NA 0.836 1.070 NA 0.627 1.10
S4 NA 0.925 1.120 NA 1.160 0.932 NA 0.771 0.00
S7 NA NA NA NA NA NA NA NA NA
S9 NA 0.836 1.160 NA 0.000 0.974 NA 0.000 0.00
S6 NA 1.070 0.932 NA 0.974 1.020 NA 1.460 1.92
S2 NA NA NA NA NA NA NA NA NA
S1 NA 0.627 0.771 NA 0.000 1.460 NA 0.000 0.00
S3 NA 1.100 0.000 NA 0.000 1.920 NA 0.000 0.00

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-INT Tekay Ty3-INT 1 0.002

clusters connected through mates:

Cluster Number of shared
read pairs		 k
266 8 0.0681
444 8 0.0748
4030 4 0.0442
6490 3 0.0335
109 2 0.00364
4310 2 0.0223
14700 2 0.0226
57700 2 0.0227
1 1 0.000554
3 1 0.000344
14 1 0.00059
31 1 0.0012
39 1 0.000956
48 1 0.000943
52 1 0.00157
86 1 0.0017
88 1 0.00135
117 1 0.0022
145 1 0.00464
159 1 0.0026
293 1 0.00909
720 1 0.0098
1860 1 0.011
6830 1 0.0112
10500 1 0.0114
13000 1 0.0114
15500 1 0.0113
17000 1 0.0114
18300 1 0.0113
30900 1 0.0114
32300 1 0.0114
41200 1 0.0114
57100 1 0.0114
57600 1 0.0114
59800 1 0.0114
63200 1 0.0114