Cluster no. 235

Cluster no. 235

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Cluster is part of supercluster: 135

Cluster characteristics:

size	512
size_real	512
ecount	2260
supercluster	135
annotations_summary	0.20% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
pair_completeness	0.510324483775811
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.001953125
satellite_probability	2.33736515693784e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	162
S5	0
S4	3
S7	160
S9	183
S6	2
S2	1
S1	1
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	217	0	4	212	262.0	7	2.0	1.0	0
S5	0	0	0	0	0.0	0	0.0	0.0	0
S4	4	0	0	7	4.0	0	0.0	0.0	0
S7	212	0	7	234	250.0	6	0.0	0.0	0
S9	262	0	4	250	277.0	7	1.5	1.5	0
S6	7	0	0	6	7.0	0	0.0	0.0	0
S2	2	0	0	0	1.5	0	0.0	0.0	0
S1	1	0	0	0	1.5	0	0.0	0.0	0
S3	0	0	0	0	0.0	0	0.0	0.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.985	NA	0.854	0.959	1.040	1.120	1.83	1.28	NA
S5	NA	NA	NA	NA	NA	NA	NA	NA	NA
S4	0.854	NA	0.000	1.490	0.750	0.000	0.00	0.00	NA
S7	0.959	NA	1.490	1.050	0.992	0.955	0.00	0.00	NA
S9	1.040	NA	0.750	0.992	0.970	0.984	1.21	1.69	NA
S6	1.120	NA	0.000	0.955	0.984	0.000	0.00	0.00	NA
S2	1.830	NA	0.000	0.000	1.210	0.000	0.00	0.00	NA
S1	1.280	NA	0.000	0.000	1.690	0.000	0.00	0.00	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.002

clusters with similarity:

Cluster	Number of similarity hits

7	25
125	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

7	27	0.0178
490	6	0.0625
2920	5	0.0571
8	2	0.00105
22	2	0.00117
46	2	0.00201
53	2	0.00313
125	2	0.00351
9140	2	0.0238
13300	2	0.0237
14300	2	0.0237
4	1	0.000595
5	1	0.000515
9	1	0.00128
11	1	0.000755
12	1	0.000785
17	1	0.000589
18	1	0.000746
102	1	0.00222
280	1	0.00664
546	1	0.0101
958	1	0.011
1200	1	0.0114
2250	1	0.0116
2890	1	0.0114
7350	1	0.0118
19500	1	0.0118
46200	1	0.0119
47600	1	0.0119
61000	1	0.0119

CL235 ----> CL7

No. of shared pairs: :27