Cluster no. 234

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Cluster is part of supercluster: 134

Cluster characteristics:

size 514
size_real 514
ecount 3987
supercluster 134
annotations_summary 94.36% organelle/plastid
1.56% organelle/mitochondria
pair_completeness 0.896678966789668
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00194552529182879
satellite_probability 3.13317635625349e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 36
S5 108
S4 98
S7 42
S9 34
S6 112
S2 30
S1 31
S3 23
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 14.0 49.5 51.0 22.5 20.5 44.5 16.0 15.5 14.0
S5 49.5 213.0 198.0 64.0 41.5 193.0 47.0 57.0 34.0
S4 51.0 198.0 173.0 53.5 42.0 168.0 42.5 38.5 37.5
S7 22.5 64.0 53.5 28.0 23.0 66.5 14.0 22.0 15.0
S9 20.5 41.5 42.0 23.0 22.0 44.0 14.5 13.5 19.5
S6 44.5 193.0 168.0 66.5 44.0 198.0 50.5 48.0 34.5
S2 16.0 47.0 42.5 14.0 14.5 50.5 20.0 16.0 8.5
S1 15.5 57.0 38.5 22.0 13.5 48.0 16.0 13.0 9.5
S3 14.0 34.0 37.5 15.0 19.5 34.5 8.5 9.5 9.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.911 0.889 1.020 1.170 1.370 0.846 1.130 1.070 1.240
S5 0.889 1.060 1.090 0.923 0.767 1.010 0.913 1.090 0.833
S4 1.020 1.090 1.070 0.861 0.867 0.984 0.921 0.820 1.030
S7 1.170 0.923 0.861 1.170 1.240 1.010 0.790 1.220 1.070
S9 1.370 0.767 0.867 1.240 1.520 0.861 1.050 0.961 1.780
S6 0.846 1.010 0.984 1.010 0.861 1.100 1.040 0.970 0.895
S2 1.130 0.913 0.921 0.790 1.050 1.040 1.520 1.200 0.815
S1 1.070 1.090 0.820 1.220 0.961 0.970 1.200 0.955 0.896
S3 1.240 0.833 1.030 1.070 1.780 0.895 0.815 0.896 1.090

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 8 0.016
plastid plastid 485 0.944

clusters with similarity:

Cluster Number of similarity hits
212 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
212 9 0.305
218 6 0.222
134 2 0.0284
17 1 0.000614
176 1 0.0247
215 1 0.0274