Cluster no. 233

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Cluster is part of supercluster: 133

Cluster characteristics:

size 526
size_real 526
ecount 3720
supercluster 133
annotations_summary
pair_completeness 0.628482972136223
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.241444866920152
satellite_probability 1.31418737936836e-11
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 183
S4 160
S7 0
S9 0
S6 183
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0 0 0 0 0 0
S5 0 436 412 0 0 428 0 0 0
S4 0 412 429 0 0 394 0 0 0
S7 0 0 0 0 0 0 0 0 0
S9 0 0 0 0 0 0 0 0 0
S6 0 428 394 0 0 386 0 0 0
S2 0 0 0 0 0 0 0 0 0
S1 0 0 0 0 0 0 0 0 0
S3 0 0 0 0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.996 0.972 NA NA 1.030 NA NA NA
S4 NA 0.972 1.050 NA NA 0.983 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 1.030 0.983 NA NA 0.983 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
185 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
185 33 0.0978
216 4 0.0219
9410 3 0.0484
73 2 0.00306
16300 2 0.0325
59800 2 0.0328
3 1 0.000347
35 1 0.000964
48 1 0.000967
61 1 0.00111
155 1 0.00392
5120 1 0.0161
6000 1 0.0163
6500 1 0.0163
10400 1 0.0161
11800 1 0.0163
13700 1 0.0163
20400 1 0.0164
20500 1 0.0164
22600 1 0.0164
28900 1 0.0164
50500 1 0.0164
51700 1 0.0164

CL233 ----> CL185

image

No. of shared pairs: :33