Cluster no. 232

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Cluster is part of supercluster: 111

Cluster characteristics:

size 531
size_real 531
ecount 1119
supercluster 111
annotations_summary 2.07% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
pair_completeness 0.365038560411311
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00188323917137476
satellite_probability 8.09461165944467e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 159
S5 0
S4 0
S7 185
S9 186
S6 0
S2 1
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 104 0 0 108 118 0 0 0 0
S5 0 0 0 0 0 0 0 0 0
S4 0 0 0 0 0 0 0 0 0
S7 108 0 0 132 140 0 1 0 0
S9 118 0 0 140 149 0 0 0 0
S6 0 0 0 0 0 0 0 0 0
S2 0 0 0 1 0 0 0 0 0
S1 0 0 0 0 0 0 0 0 0
S3 0 0 0 0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.070 NA NA 0.964 0.98 NA 0.00 NA NA
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 0.964 NA NA 1.010 1.01 NA 2.93 NA NA
S9 0.980 NA NA 1.010 1.01 NA 0.00 NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 0.000 NA NA 2.930 0.00 NA 0.00 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-GAG SIRE Ty1-GAG 11 0.021

clusters with similarity:

Cluster Number of similarity hits
129 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
280 23 0.12
22 3 0.00171
1650 3 0.0232
8 2 0.00103
11 2 0.00147
2670 2 0.0156
6000 2 0.0159
8160 2 0.0159
15200 2 0.016
21600 2 0.0161
28100 2 0.0161
41500 2 0.0161
43200 2 0.0161
12 1 0.000761
32 1 0.0014
59 1 0.000771
91 1 0.00128
129 1 0.0028
439 1 0.00714
770 1 0.00743
2630 1 0.00787
5220 1 0.00791
10300 1 0.00797
14000 1 0.008
14400 1 0.008
14700 1 0.008
17800 1 0.00806
22200 1 0.00803
44400 1 0.00803
46400 1 0.00803
46500 1 0.00803
47800 1 0.00803
49500 1 0.00803
52700 1 0.00803
56500 1 0.00803
59400 1 0.00803
67800 1 0.00803

CL232 ----> CL280

image

No. of shared pairs: :23