Cluster no. 231

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Cluster is part of supercluster: 132

Cluster characteristics:

size 540
size_real 540
ecount 13534
supercluster 132
annotations_summary 0.19% organelle/mitochondria
0.19% organelle/plastid
pair_completeness 0.428571428571429
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.390740740740741
satellite_probability 2.71201922050319e-07
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 168
S4 176
S7 1
S9 0
S6 194
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 23.0 21.0 0.0 0 37.5 0 0 0
S5 23.0 1060.0 1090.0 3.5 0 1610.0 0 0 0
S4 21.0 1090.0 1090.0 8.5 0 1620.0 0 0 0
S7 0.0 3.5 8.5 0.0 0 8.0 0 0 0
S9 0.0 0.0 0.0 0.0 0 0.0 0 0 0
S6 37.5 1610.0 1620.0 8.0 0 2560.0 0 0 0
S2 0.0 0.0 0.0 0.0 0 0.0 0 0 0
S1 0.0 0.0 0.0 0.0 0 0.0 0 0 0
S3 0.0 0.0 0.0 0.0 0 0.0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 1.010 0.911 0.000 NA 1.070 NA NA NA
S5 1.010 1.000 1.020 0.627 NA 0.988 NA NA NA
S4 0.911 1.020 1.010 1.500 NA 0.982 NA NA NA
S7 0.000 0.627 1.500 0.000 NA 0.929 NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 1.070 0.988 0.982 0.929 NA 1.020 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.0019
plastid plastid 1 0.0019

clusters with similarity:

Cluster Number of similarity hits
45 143
49 52
72 27
109 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
45 82 0.0533
49 16 0.00971
47 4 0.00378
72 3 0.00391
109 3 0.00526
698 3 0.0256
6760 3 0.0271
6 2 0.000727
2750 2 0.0179
2960 2 0.0179
9670 2 0.0182
52000 2 0.0183
52200 2 0.0183
63400 2 0.0183
10 1 0.000592
76 1 0.00154
369 1 0.00685
5160 1 0.00909
5770 1 0.00913
8260 1 0.00917
8560 1 0.00909
9180 1 0.00909
10500 1 0.00917
10800 1 0.00917
12700 1 0.00913
13500 1 0.00922
19600 1 0.00913
20700 1 0.00917
23200 1 0.00917
24000 1 0.00917
24800 1 0.00917
62900 1 0.00917
64000 1 0.00917

CL231 ----> CL45

image

No. of shared pairs: :82

CL231 ----> CL49

image

No. of shared pairs: :16