Cluster no. 230

Cluster no. 230

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Cluster is part of supercluster: 131

Cluster characteristics:

size	556
size_real	556
ecount	1232
supercluster	131
annotations_summary
pair_completeness	0.293023255813953
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00179856115107914
satellite_probability	1.24960682050603e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	209
S4	169
S7	0
S9	0
S6	178
S2	0
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0	0	0	0	0	0	0	0
S5	0	180	131	0	0	144	0	0	0
S4	0	131	114	0	0	124	0	0	0
S7	0	0	0	0	0	0	0	0	0
S9	0	0	0	0	0	0	0	0	0
S6	0	144	124	0	0	140	0	0	0
S2	0	0	0	0	0	0	0	0	0
S1	0	0	0	0	0	0	0	0	0
S3	0	0	0	0	0	0	0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	1.070	0.962	NA	NA	0.958	NA	NA	NA
S4	NA	0.962	1.030	NA	NA	1.010	NA	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	NA	0.958	1.010	NA	NA	1.040	NA	NA	NA
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

3	3
34	2
56	2
13	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

29	34	0.0286
3	16	0.00538
13	12	0.00716
34	9	0.00677
56	7	0.00906
986	7	0.0438
481	4	0.0239
3850	4	0.0257
1540	3	0.019
2700	3	0.0193
14700	3	0.0195
4570	2	0.0129
4680	2	0.0129
6690	2	0.0129
17000	2	0.013
17300	2	0.013
28000	2	0.0131
69800	2	0.0131
6	1	0.000358
37	1	0.00112
48	1	0.000888
117	1	0.00192
323	1	0.00478
634	1	0.00595
1100	1	0.00617
1220	1	0.00637
1580	1	0.00633
1720	1	0.00639
1810	1	0.00635
2760	1	0.00643
3650	1	0.00643
4650	1	0.00649
8690	1	0.00654
13400	1	0.00656
15100	1	0.00651
15300	1	0.00656
16700	1	0.00651
18000	1	0.00651
18000	1	0.00651
26100	1	0.00654
33000	1	0.00654
34000	1	0.00654
34700	1	0.00654
36200	1	0.00654
39300	1	0.00654
41900	1	0.00654
46600	1	0.00654
46800	1	0.00654
47800	1	0.00654
48900	1	0.00654
59000	1	0.00654
62600	1	0.00654
69000	1	0.00654

CL230 ----> CL29

No. of shared pairs: :34

CL230 ----> CL3

No. of shared pairs: :16

CL230 ----> CL13

No. of shared pairs: :12