Cluster no. 229

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Cluster is part of supercluster: 130

Cluster characteristics:

size 557
size_real 557
ecount 2715
supercluster 130
annotations_summary
pair_completeness 0.365196078431373
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00179533213644524
satellite_probability 8.09461165944467e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 0
S4 0
S7 3
S9 0
S6 0
S2 183
S1 179
S3 191
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 0 0 0.0 0 0 0.0 0.5 0.0
S5 0.0 0 0 0.0 0 0 0.0 0.0 0.0
S4 0.0 0 0 0.0 0 0 0.0 0.0 0.0
S7 0.0 0 0 0.0 0 0 2.5 2.0 2.5
S9 0.0 0 0 0.0 0 0 0.0 0.0 0.0
S6 0.0 0 0 0.0 0 0 0.0 0.0 0.0
S2 0.0 0 0 2.5 0 0 255.0 291.0 278.0
S1 0.5 0 0 2.0 0 0 291.0 316.0 326.0
S3 0.0 0 0 2.5 0 0 278.0 326.0 340.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 NA NA 0.000 NA NA 0.000 2.900 0.000
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 0.0 NA NA 0.000 NA NA 1.170 0.829 1.020
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 0.0 NA NA 1.170 NA NA 1.010 1.020 0.964
S1 2.9 NA NA 0.829 NA NA 1.020 0.980 1.000
S3 0.0 NA NA 1.020 NA NA 0.964 1.000 1.030

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
566 11 0.0748
129 2 0.00551
1720 2 0.0147
9040 2 0.0152
47500 2 0.0153
7 1 0.000638
23 1 0.000793
27 1 0.001
30 1 0.000878
46 1 0.000961
96 1 0.00148
108 1 0.00185
116 1 0.00213
148 1 0.00199
168 1 0.0023
171 1 0.00234
174 1 0.00305
306 1 0.00556
450 1 0.00692
1000 1 0.00727
1300 1 0.0073
1320 1 0.00741
1340 1 0.00738
4010 1 0.00752
14200 1 0.00763
15600 1 0.00763
15700 1 0.00763
17100 1 0.00763
18700 1 0.00763
38200 1 0.00766
38600 1 0.00766
40700 1 0.00766
42800 1 0.00766
61400 1 0.00766
63000 1 0.00766
65800 1 0.00766
70700 1 0.00766

CL229 ----> CL566

image

No. of shared pairs: :11