Cluster no. 228

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Cluster is part of supercluster: 129

Cluster characteristics:

size 561
size_real 561
ecount 2201
supercluster 129
annotations_summary
pair_completeness 0.562674094707521
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0017825311942959
satellite_probability 1.29477276776204e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2
S5 2
S4 1
S7 0
S9 0
S6 0
S2 176
S1 194
S3 186
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 0.0 0.0 0 0 0 2.0 1.5 1.0
S5 0.0 0.0 0.0 0 0 0 2.5 3.5 2.5
S4 0.0 0.0 0.0 0 0 0 3.0 1.5 1.0
S7 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0
S9 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0
S6 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0
S2 2.0 2.5 3.0 0 0 0 229.0 276.0 226.0
S1 1.5 3.5 1.5 0 0 0 276.0 250.0 234.0
S3 1.0 2.5 1.0 0 0 0 226.0 234.0 216.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.000 0.000 NA NA NA 1.330 0.958 0.720
S5 0.000 0.000 0.000 NA NA NA 0.878 1.180 0.953
S4 0.000 0.000 0.000 NA NA NA 1.630 0.784 0.589
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 1.330 0.878 1.630 NA NA NA 0.927 1.070 0.990
S1 0.958 1.180 0.784 NA NA NA 1.070 0.939 0.988
S3 0.720 0.953 0.589 NA NA NA 0.990 0.988 1.030

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
928 12 0.137
154 8 0.0383
692 8 0.0925
2400 4 0.0491
2000 3 0.0368
5600 3 0.037
9000 3 0.0373
9560 3 0.0373
4410 2 0.0245
6040 2 0.0247
6490 2 0.025
7320 2 0.025
8920 2 0.0248
10300 2 0.0248
12700 2 0.025
14600 2 0.025
18300 2 0.025
28000 2 0.0252
52900 2 0.0252
57000 2 0.0252
64000 2 0.0252
66700 2 0.0252
85 1 0.00171
129 1 0.00321
148 1 0.00222
525 1 0.012
1630 1 0.0118
2540 1 0.0124
4310 1 0.0125
6190 1 0.0127
7600 1 0.0126
7930 1 0.0126
8350 1 0.0124
10800 1 0.0124
10800 1 0.0126
13500 1 0.0125
14800 1 0.0125
16200 1 0.0125
17700 1 0.0125
18300 1 0.0125
18700 1 0.0125
19700 1 0.0125
20200 1 0.0126
24500 1 0.0126
25900 1 0.0126
27600 1 0.0126
29000 1 0.0126
36100 1 0.0126
42900 1 0.0126
45400 1 0.0126
52500 1 0.0126
54300 1 0.0126
62100 1 0.0126
63100 1 0.0126
65500 1 0.0126
66600 1 0.0126

CL228 ----> CL928

image

No. of shared pairs: :12