Cluster no. 225

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Cluster is part of supercluster: 126

Cluster characteristics:

size 574
size_real 574
ecount 2296
supercluster 126
annotations_summary 3.83% organelle/mitochondria
pair_completeness 0.483204134366925
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00174216027874564
satellite_probability 3.21043016719236e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 1
S4 0
S7 0
S9 0
S6 0
S2 168
S1 193
S3 211
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 0 0 0 0 0 2.5 3 3.5
S5 0.0 0 0 0 0 0 0.0 3 2.0
S4 0.0 0 0 0 0 0 0.0 0 0.0
S7 0.0 0 0 0 0 0 0.0 0 0.0
S9 0.0 0 0 0 0 0 0.0 0 0.0
S6 0.0 0 0 0 0 0 0.0 0 0.0
S2 2.5 0 0 0 0 0 177.0 212 262.0
S1 3.0 3 0 0 0 0 212.0 260 272.0
S3 3.5 2 0 0 0 0 262.0 272 342.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.00 NA NA NA NA 0.977 1.020 1.010
S5 0.000 0.00 NA NA NA NA 0.000 1.840 1.040
S4 NA NA NA NA NA NA NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 0.977 0.00 NA NA NA NA 0.955 0.994 1.050
S1 1.020 1.84 NA NA NA NA 0.994 1.060 0.945
S3 1.010 1.04 NA NA NA NA 1.050 0.945 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 22 0.038

clusters connected through mates:

Cluster Number of shared
read pairs		 k
174 18 0.0603
2100 7 0.0664
1400 6 0.0577
569 5 0.0452
524 4 0.0345
1430 4 0.0386
5820 4 0.039
13800 3 0.0296
653 2 0.0181
2140 2 0.0191
3680 2 0.0193
3700 2 0.0195
3760 2 0.0195
26400 2 0.0198
53000 2 0.0198
64200 2 0.0198
23 1 0.000812
30 1 0.000902
42 1 0.00147
74 1 0.00234
110 1 0.00136
113 1 0.00207
148 1 0.00212
224 1 0.00851
1590 1 0.00952
3880 1 0.00966
4710 1 0.00971
5010 1 0.00971
5060 1 0.00971
8470 1 0.0099
14100 1 0.00985
27000 1 0.0099
29900 1 0.0099
33500 1 0.0099
68400 1 0.0099
69200 1 0.0099

CL225 ----> CL174

image

No. of shared pairs: :18