Cluster no. 224
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Cluster is part of supercluster: 125
Cluster characteristics:
| size |
575 |
| size_real |
575 |
| ecount |
6965 |
| supercluster |
125 |
| annotations_summary |
|
| pair_completeness |
0.885245901639344 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.554782608695652 |
| satellite_probability |
0.000109711174782155 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
0 |
| S5 |
2 |
| S4 |
0 |
| S7 |
3 |
| S9 |
1 |
| S6 |
0 |
| S2 |
171 |
| S1 |
174 |
| S3 |
224 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0 |
0.0 |
0 |
0.0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S5 |
0 |
0.0 |
0 |
0.5 |
0.0 |
0 |
9.0 |
12.0 |
18.5 |
| S4 |
0 |
0.0 |
0 |
0.0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S7 |
0 |
0.5 |
0 |
0.0 |
0.0 |
0 |
17.0 |
12.5 |
19.0 |
| S9 |
0 |
0.0 |
0 |
0.0 |
0.0 |
0 |
1.5 |
2.5 |
4.5 |
| S6 |
0 |
0.0 |
0 |
0.0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S2 |
0 |
9.0 |
0 |
17.0 |
1.5 |
0 |
576.0 |
603.0 |
804.0 |
| S1 |
0 |
12.0 |
0 |
12.5 |
2.5 |
0 |
603.0 |
606.0 |
836.0 |
| S3 |
0 |
18.5 |
0 |
19.0 |
4.5 |
0 |
804.0 |
836.0 |
1100.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S5 |
NA |
0.00 |
NA |
1.780 |
0.000 |
NA |
0.780 |
1.010 |
1.160 |
| S4 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S7 |
NA |
1.78 |
NA |
0.000 |
0.000 |
NA |
1.200 |
0.858 |
0.969 |
| S9 |
NA |
0.00 |
NA |
0.000 |
0.000 |
NA |
0.612 |
0.989 |
1.320 |
| S6 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S2 |
NA |
0.78 |
NA |
1.200 |
0.612 |
NA |
0.993 |
1.010 |
0.999 |
| S1 |
NA |
1.01 |
NA |
0.858 |
0.989 |
NA |
1.010 |
0.984 |
1.010 |
| S3 |
NA |
1.16 |
NA |
0.969 |
1.320 |
NA |
0.999 |
1.010 |
0.992 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 158 |
14 |
0.193 |
| 133 |
11 |
0.121 |
| 225 |
1 |
0.00851 |
| 15100 |
1 |
0.0526 |
| 41800 |
1 |
0.0541 |
|
CL224 ----> CL158
No. of shared pairs: :14
CL224 ----> CL133
No. of shared pairs: :11