Cluster no. 223

Cluster no. 223

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Cluster is part of supercluster: 124

Cluster characteristics:

size	579
size_real	579
ecount	3022
supercluster	124
annotations_summary	8.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness	0.496124031007752
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00172711571675302
satellite_probability	2.60623974767306e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	136
S5	1
S4	0
S7	107
S9	133
S6	2
S2	59
S1	58
S3	83

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	190.0	0.0	0	188.0	184.0	3	6.5	10.0	14.0
S5	0.0	0.0	0	0.5	0.0	0	0.0	0.0	0.0
S4	0.0	0.0	0	0.0	0.0	0	0.0	0.0	0.0
S7	188.0	0.5	0	185.0	197.0	0	17.0	12.0	28.0
S9	184.0	0.0	0	197.0	201.0	0	22.0	18.5	44.5
S6	3.0	0.0	0	0.0	0.0	1	0.0	0.0	0.0
S2	6.5	0.0	0	17.0	22.0	0	92.0	71.0	134.0
S1	10.0	0.0	0	12.0	18.5	0	71.0	53.0	91.0
S3	14.0	0.0	0	28.0	44.5	0	134.0	91.0	216.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.6200	0.00	NA	1.520	1.400	3.8	0.0961	0.198	0.134
S5	0.0000	0.00	NA	4.810	0.000	0.0	0.0000	0.000	0.000
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	1.5200	4.81	NA	1.420	1.420	0.0	0.2390	0.226	0.255
S9	1.4000	0.00	NA	1.420	1.370	0.0	0.2910	0.328	0.382
S6	3.8000	0.00	NA	0.000	0.000	189.0	0.0000	0.000	0.000
S2	0.0961	0.00	NA	0.239	0.291	0.0	2.3600	2.450	2.240
S1	0.1980	0.00	NA	0.226	0.328	0.0	2.4500	2.450	2.040
S3	0.1340	0.00	NA	0.255	0.382	0.0	2.2400	2.040	2.340

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Athila Ty3-GAG Athila Ty3-GAG 47 0.081

clusters connected through mates:

Cluster	Number of shared read pairs	k

310	12	0.093
759	3	0.0279
1650	3	0.0296
2960	3	0.0294
5570	3	0.03
268	2	0.0142
1520	2	0.019
1640	2	0.0197
4740	2	0.0199
5480	2	0.0199
17800	2	0.0202
20800	2	0.0203
31100	2	0.0203
37500	2	0.0203
8	1	0.000523
11	1	0.000747
12	1	0.000776
96	1	0.00155
168	1	0.00248
662	1	0.00966
1000	1	0.00957
5570	1	0.01
12600	1	0.0101
13300	1	0.0102
13600	1	0.0101
18900	1	0.0102
21200	1	0.0102
30900	1	0.0102
31100	1	0.0102
38800	1	0.0102
44100	1	0.0102
54000	1	0.0102
69400	1	0.0102

CL223 ----> CL310

No. of shared pairs: :12