Cluster no. 222

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Cluster is part of supercluster: 123

Cluster characteristics:

size 624
size_real 624
ecount 1855
supercluster 123
annotations_summary 53.69% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
pair_completeness 0.533169533169533
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0016025641025641
satellite_probability 1.86264069827155e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 75
S5 1
S4 0
S7 75
S9 83
S6 1
S2 124
S1 129
S3 136
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 25.0 0.5 0 26.0 38.5 0.0 27.0 28.0 22.0
S5 0.5 0.0 0 0.0 0.0 0.0 0.5 0.5 0.5
S4 0.0 0.0 0 0.0 0.0 0.0 0.0 0.0 0.0
S7 26.0 0.0 0 31.0 30.5 0.0 27.0 24.5 31.0
S9 38.5 0.0 0 30.5 33.0 0.0 30.0 25.5 20.5
S6 0.0 0.0 0 0.0 0.0 0.0 0.5 0.5 0.0
S2 27.0 0.5 0 27.0 30.0 0.5 159.0 116.0 127.0
S1 28.0 0.5 0 24.5 25.5 0.5 116.0 121.0 106.0
S3 22.0 0.5 0 31.0 20.5 0.0 127.0 106.0 121.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.660 2.780 NA 1.700 2.400 0.0 0.615 0.737 0.572
S5 2.780 0.000 NA 0.000 0.000 0.0 0.951 1.100 1.080
S4 NA NA NA NA NA NA NA NA NA
S7 1.700 0.000 NA 1.990 1.870 0.0 0.604 0.634 0.791
S9 2.400 0.000 NA 1.870 1.930 0.0 0.641 0.630 0.500
S6 0.000 0.000 NA 0.000 0.000 0.0 1.900 2.200 0.000
S2 0.615 0.951 NA 0.604 0.641 1.9 1.240 1.050 1.130
S1 0.737 1.100 NA 0.634 0.630 2.2 1.050 1.260 1.080
S3 0.572 1.080 NA 0.791 0.500 0.0 1.130 1.080 1.230

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 335 0.54

clusters connected through mates:

Cluster Number of shared
read pairs		 k
300 8 0.0675
755 6 0.0577
2480 5 0.0505
5350 5 0.051
1270 4 0.0406
1890 4 0.04
5220 4 0.0408
10600 4 0.0412
6150 3 0.0308
6770 3 0.0308
10700 3 0.0309
15100 3 0.0311
5120 2 0.0204
7950 2 0.0206
22200 2 0.0208
37700 2 0.0208
38300 2 0.0208
52100 2 0.0208
23 1 0.000816
85 1 0.00166
174 1 0.00341
201 1 0.00844
489 1 0.00909
1780 1 0.00995
2000 1 0.0102
3500 1 0.0101
5100 1 0.0103
7070 1 0.0104
7160 1 0.0104
11000 1 0.0103
13100 1 0.0104
14200 1 0.0104
14500 1 0.0104
15700 1 0.0104
17100 1 0.0104
21900 1 0.0104
24000 1 0.0104
25800 1 0.0104
27300 1 0.0104
32600 1 0.0104
69400 1 0.0104
69600 1 0.0104
70500 1 0.0104