Cluster no. 221

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Cluster is part of supercluster: 122

Cluster characteristics:

size	629
size_real	629
ecount	5623
supercluster	122
annotations_summary	25.91% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.48% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.16% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.16% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
pair_completeness	0.486997635933806
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00158982511923688
satellite_probability	2.89707838193454e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	233
S5	2
S4	3
S7	197
S9	188
S6	4
S2	2
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2
S8	634.0	10.5	7.0	612.0	614.0	14.0	7.0
S5	10.5	0.0	0.0	13.0	10.0	0.0	0.0
S4	7.0	0.0	0.0	7.0	10.5	0.0	0.5
S7	612.0	13.0	7.0	564.0	576.0	6.5	7.0
S9	614.0	10.0	10.5	576.0	591.0	7.5	14.5
S6	14.0	0.0	0.0	6.5	7.5	0.0	0.0
S2	7.0	0.0	0.5	7.0	14.5	0.0	0.0
S1	0.0	0.0	0.0	0.0	0.0	0.0	0.0
S3	0.0	0.0	0.0	0.0	0.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.989	0.928	0.829	1.020	0.997	1.480	0.715	NA	NA
S5	0.928	0.000	0.000	1.220	0.921	0.000	0.000	NA	NA
S4	0.829	0.000	0.000	0.882	1.300	0.000	3.880	NA	NA
S7	1.020	1.220	0.882	0.995	0.994	0.731	0.760	NA	NA
S9	0.997	0.921	1.300	0.994	1.000	0.826	1.540	NA	NA
S6	1.480	0.000	0.000	0.731	0.826	0.000	0.000	NA	NA
S2	0.715	0.000	3.880	0.760	1.540	0.000	0.000	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

Reads annotation summary

cl_string domain Freq proportion

CRM Ty3-GAG CRM Ty3-GAG 3 0.0048

Galadriel Ty3-GAG Galadriel Ty3-GAG 1 0.0016

Reina Ty3-GAG Reina Ty3-GAG 1 0.0016

Tekay Ty3-GAG Tekay Ty3-GAG 163 0.2591

clusters with similarity:

Cluster	Number of similarity hits

12	58
4	40
32	22
104	10
79	7
9	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

12	65	0.05
4	52	0.0305
32	36	0.0515
53	7	0.0105
104	5	0.0169
263	3	0.0158
2130	3	0.0265
9	2	0.00248
6770	2	0.0182
26200	2	0.0183
54400	2	0.0183
5	1	0.000508
17	1	0.00058
22	1	0.000576
54	1	0.00106
124	1	0.00303
687	1	0.00826
4500	1	0.00897
5320	1	0.00905
15600	1	0.00909
16600	1	0.00917
45800	1	0.00913
56700	1	0.00913

CL221 ----> CL12

No. of shared pairs: :65

CL221 ----> CL4

No. of shared pairs: :52

CL221 ----> CL32

No. of shared pairs: :36