Cluster no. 220

Cluster no. 220

Go back to cluster table

Cluster is part of supercluster: 121

Cluster characteristics:

size	629
size_real	629
ecount	6277
supercluster	121
annotations_summary	0.16% organelle/plastid
pair_completeness	0.490521327014218
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0286168521462639
satellite_probability	2.65679471942832e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	184
S4	215
S7	2
S9	0
S6	227
S2	1
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0	0	0.0	0	0.0	0	0	0
S5	0	560	689	7.0	0	658.0	1	0	0
S4	0	689	822	5.0	0	716.0	0	0	0
S7	0	7	5	1.0	0	7.5	0	0	0
S9	0	0	0	0.0	0	0.0	0	0	0
S6	0	658	716	7.5	0	727.0	0	0	0
S2	0	1	0	0.0	0	0.0	0	0	0
S1	0	0	0	0.0	0	0.0	0	0	0
S3	0	0	0	0.0	0	0.0	0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	0.959	1.010	1.120	NA	1.020	3.28	NA	NA
S4	NA	1.010	1.040	0.686	NA	0.955	0.00	NA	NA
S7	NA	1.120	0.686	14.900	NA	1.090	0.00	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	NA	1.020	0.955	1.090	NA	1.030	0.00	NA	NA
S2	NA	3.280	0.000	0.000	NA	0.000	0.00	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.0016

clusters with similarity:

Cluster	Number of similarity hits

84	43
76	26
15	16
6	14
19	5
109	5
1	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

76	47	0.0724
84	46	0.0539
6	11	0.004
19	9	0.00495
55	7	0.00849
1	6	0.00329
15	4	0.00168
109	4	0.00702
35	3	0.00277
93	3	0.00393
179	3	0.008
39	2	0.00188
10200	2	0.0183
23800	2	0.0184
14	1	0.000583
26	1	0.000968
44	1	0.00104
67	1	0.00104
89	1	0.00172
151	1	0.00186
252	1	0.00532
258	1	0.00637
3490	1	0.00905
9860	1	0.00922
13700	1	0.00917
15100	1	0.00917
19000	1	0.00926
22000	1	0.00922
32700	1	0.00922
36200	1	0.00922

CL220 ----> CL76

No. of shared pairs: :47

CL220 ----> CL84

No. of shared pairs: :46

CL220 ----> CL6

No. of shared pairs: :11