Cluster no. 219

Cluster no. 219

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Cluster is part of supercluster: 120

Cluster characteristics:

size	634
size_real	634
ecount	4146
supercluster	120
annotations_summary	86.28% organelle/plastid 0.95% organelle/mitochondria
pair_completeness	0.859237536656892
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00157728706624606
satellite_probability	7.61231862084818e-24
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	44
S5	122
S4	144
S7	46
S9	41
S6	109
S2	31
S1	47
S3	50

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	26.0	49.0	54.0	25.5	26.5	51.0	15.0	23.0	28.0
S5	49.0	179.0	212.0	50.0	38.5	173.0	31.0	52.0	59.5
S4	54.0	212.0	257.0	49.5	38.5	186.0	36.0	52.5	60.0
S7	25.5	50.0	49.5	26.0	28.0	30.5	12.5	28.5	23.5
S9	26.5	38.5	38.5	28.0	16.0	29.5	12.5	17.0	25.0
S6	51.0	173.0	186.0	30.5	29.5	175.0	27.0	34.0	45.5
S2	15.0	31.0	36.0	12.5	12.5	27.0	12.0	18.0	22.0
S1	23.0	52.0	52.5	28.5	17.0	34.0	18.0	44.0	26.5
S3	28.0	59.5	60.0	23.5	25.0	45.5	22.0	26.5	29.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.210	0.808	0.794	1.290	1.590	0.944	1.120	1.080	1.220
S5	0.808	1.040	1.100	0.896	0.817	1.130	0.819	0.864	0.916
S4	0.794	1.100	1.190	0.792	0.729	1.090	0.848	0.779	0.824
S7	1.290	0.896	0.792	1.440	1.830	0.614	1.020	1.460	1.110
S9	1.590	0.817	0.729	1.830	1.240	0.703	1.200	1.030	1.400
S6	0.944	1.130	1.090	0.614	0.703	1.280	0.800	0.634	0.786
S2	1.120	0.819	0.848	1.020	1.200	0.800	1.440	1.360	1.540
S1	1.080	0.864	0.779	1.460	1.030	0.634	1.360	2.090	1.170
S3	1.220	0.916	0.824	1.110	1.400	0.786	1.540	1.170	1.180

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 6 0.0095

plastid plastid 547 0.8628

clusters with similarity:

Cluster	Number of similarity hits

214

1

clusters connected through mates:

Cluster	Number of shared read pairs	k

187	12	0.2
214	12	0.255
134	3	0.0373
3	1	0.000352
59	1	0.000835
141	1	0.00499
149	1	0.00699
193	1	0.012
204	1	0.023
41400	1	0.04

CL219 ----> CL187

No. of shared pairs: :12

CL219 ----> CL214

No. of shared pairs: :12