Cluster no. 218

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Cluster is part of supercluster: 119

Cluster characteristics:

size 638
size_real 638
ecount 4941
supercluster 119
annotations_summary 98.43% organelle/plastid
0.16% organelle/mitochondria
pair_completeness 0.921686746987952
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00156739811912226
satellite_probability 1.97433114407246e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 33
S5 105
S4 141
S7 60
S9 44
S6 131
S2 41
S1 48
S3 35
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 22.0 45.5 55.0 30.5 22.0 39.5 11.5 26.5 11.5
S5 45.5 147.0 170.0 77.0 37.5 192.0 61.0 70.0 44.5
S4 55.0 170.0 257.0 92.0 71.0 249.0 62.5 71.5 51.5
S7 30.5 77.0 92.0 45.0 33.5 73.5 33.5 47.5 26.5
S9 22.0 37.5 71.0 33.5 27.0 55.5 14.0 27.5 14.0
S6 39.5 192.0 249.0 73.5 55.5 225.0 64.5 77.5 47.5
S2 11.5 61.0 62.5 33.5 14.0 64.5 26.0 22.0 21.5
S1 26.5 70.0 71.5 47.5 27.5 77.5 22.0 35.0 22.5
S3 11.5 44.5 51.5 26.5 14.0 47.5 21.5 22.5 12.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.560 1.010 0.953 1.240 1.360 0.722 0.680 1.240 0.856
S5 1.010 1.020 0.924 0.982 0.727 1.090 1.130 1.020 1.040
S4 0.953 0.924 1.090 0.917 1.080 1.110 0.903 0.818 0.937
S7 1.240 0.982 0.917 1.060 1.190 0.773 1.140 1.280 1.130
S9 1.360 0.727 1.080 1.190 1.460 0.887 0.724 1.120 0.911
S6 0.722 1.090 1.110 0.773 0.887 1.060 0.984 0.935 0.912
S2 0.680 1.130 0.903 1.140 0.724 0.984 1.280 0.859 1.330
S1 1.240 1.020 0.818 1.280 1.120 0.935 0.859 1.080 1.110
S3 0.856 1.040 0.937 1.130 0.911 0.912 1.330 1.110 0.937

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.0016
plastid plastid 628 0.9843

clusters with similarity:

Cluster Number of similarity hits
207 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
207 7 0.222
234 6 0.222
17 1 0.000614
70 1 0.00298
84 1 0.00132
116 1 0.00282
156 1 0.0194
10600 1 0.0714