Cluster no. 216

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Cluster is part of supercluster: 117

Cluster characteristics:

size 665
size_real 665
ecount 3106
supercluster 117
annotations_summary
pair_completeness 0.461538461538462
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00150375939849624
satellite_probability 3.90603663686178e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 230
S4 216
S7 0
S9 0
S6 217
S2 0
S1 0
S3 1
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 0.5 0.5 0 0 1.0 0 0 0.0
S5 0.5 451.0 392.0 0 0 336.0 0 0 1.0
S4 0.5 392.0 323.0 0 0 304.0 0 0 1.5
S7 0.0 0.0 0.0 0 0 0.0 0 0 0.0
S9 0.0 0.0 0.0 0 0 0.0 0 0 0.0
S6 1.0 336.0 304.0 0 0 257.0 0 0 0.5
S2 0.0 0.0 0.0 0 0 0.0 0 0 0.0
S1 0.0 0.0 0.0 0 0 0.0 0 0 0.0
S3 0.0 1.0 1.5 0 0 0.5 0 0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.657 0.761 NA NA 1.730 NA NA 0.000
S5 0.657 1.000 1.010 NA NA 0.984 NA NA 0.877
S4 0.761 1.010 0.962 NA NA 1.030 NA NA 1.520
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 1.730 0.984 1.030 NA NA 0.988 NA NA 0.576
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 0.000 0.877 1.520 NA NA 0.576 NA NA 0.000

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
73 11
47 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
73 32 0.0446
41 10 0.0141
975 6 0.0462
3330 5 0.0395
47 4 0.00373
233 4 0.0219
1480 4 0.031
1950 4 0.0316
883 3 0.0231
8520 3 0.0241
67 2 0.00204
621 2 0.0154
2860 2 0.0157
4760 2 0.0162
8090 2 0.0161
11000 2 0.0161
15700 2 0.0161
19100 2 0.0161
30700 2 0.0162
40600 2 0.0162
44700 2 0.0162
48000 2 0.0162
67900 2 0.0162
29 1 0.000861
56 1 0.00134
72 1 0.00128
80 1 0.00116
81 1 0.00203
100 1 0.00182
132 1 0.00412
146 1 0.00155
211 1 0.00331
3480 1 0.00791
3610 1 0.008
4710 1 0.00797
4780 1 0.0081
7840 1 0.00803
9220 1 0.0081
11600 1 0.00806
12200 1 0.00806
15800 1 0.00806
17800 1 0.00806
27200 1 0.0081
32100 1 0.0081
34500 1 0.0081
35300 1 0.0081
49600 1 0.0081
51100 1 0.0081
51700 1 0.0081
56600 1 0.0081
58800 1 0.0081

CL216 ----> CL73

image

No. of shared pairs: :32

CL216 ----> CL41

image

No. of shared pairs: :10