Cluster no. 215

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Cluster is part of supercluster: 116

Cluster characteristics:

size 667
size_real 667
ecount 5124
supercluster 116
annotations_summary 100.00% organelle/plastid
pair_completeness 0.873595505617977
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00149925037481259
satellite_probability 6.1246173690846e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 60
S5 129
S4 115
S7 41
S9 59
S6 139
S2 36
S1 52
S3 36
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 36.0 87.0 68.5 23.0 40.5 94.5 25.0 38.5 27.5
S5 87.0 214.0 192.0 48.0 91.0 219.0 54.5 73.5 49.5
S4 68.5 192.0 153.0 42.5 90.5 196.0 42.0 62.5 42.5
S7 23.0 48.0 42.5 16.0 25.5 72.5 16.5 28.5 11.5
S9 40.5 91.0 90.5 25.5 43.0 87.0 22.5 30.0 23.0
S6 94.5 219.0 196.0 72.5 87.0 252.0 54.0 80.5 54.0
S2 25.0 54.5 42.0 16.5 22.5 54.0 16.0 18.0 20.5
S1 38.5 73.5 62.5 28.5 30.0 80.5 18.0 24.0 24.0
S3 27.5 49.5 42.5 11.5 23.0 54.0 20.5 24.0 17.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.951 0.984 0.895 0.942 1.040 0.990 1.080 1.180 1.190
S5 0.984 1.040 1.070 0.842 1.000 0.983 1.010 0.965 0.915
S4 0.895 1.070 0.990 0.862 1.150 1.020 0.899 0.948 0.908
S7 0.942 0.842 0.862 1.020 1.020 1.180 1.110 1.350 0.770
S9 1.040 1.000 1.150 1.020 1.070 0.887 0.946 0.894 0.965
S6 0.990 0.983 1.020 1.180 0.887 1.050 0.927 0.979 0.925
S2 1.080 1.010 0.899 1.110 0.946 0.927 1.130 0.903 1.450
S1 1.180 0.965 0.948 1.350 0.894 0.979 0.903 0.854 1.200
S3 1.190 0.915 0.908 0.770 0.965 0.925 1.450 1.200 1.200

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 667 1

clusters with similarity:

Cluster Number of similarity hits
191 3
204 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
191 14 0.311
204 10 0.238
17 1 0.000611
19 1 0.000578
25 1 0.00129
113 1 0.00247
127 1 0.00606
160 1 0.0165
234 1 0.0274
245 1 0.025
293 1 0.022
16700 1 0.0417
21500 1 0.0426
37800 1 0.0426
66100 1 0.0426

CL215 ----> CL191

image

No. of shared pairs: :14

CL215 ----> CL204

image

No. of shared pairs: :10