Cluster no. 214

Cluster no. 214

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Cluster is part of supercluster: 115

Cluster characteristics:

size	678
size_real	678
ecount	4965
supercluster	115
annotations_summary	85.84% organelle/plastid 0.29% organelle/mitochondria
pair_completeness	0.87292817679558
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00147492625368732
satellite_probability	6.1246173690846e-24
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	59
S5	121
S4	128
S7	39
S9	50
S6	145
S2	48
S1	49
S3	39

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	42.0	73.0	72.5	31.5	43.5	85.5	35.5	41.0	27.0
S5	73.0	192.0	190.0	54.0	45.5	202.0	51.0	50.5	54.5
S4	72.5	190.0	215.0	42.0	56.5	227.0	58.0	52.5	51.0
S7	31.5	54.0	42.0	15.0	34.0	54.5	21.5	17.5	15.5
S9	43.5	45.5	56.5	34.0	33.0	57.5	30.0	25.0	18.0
S6	85.5	202.0	227.0	54.5	57.5	235.0	68.5	68.5	51.5
S2	35.5	51.0	58.0	21.5	30.0	68.5	23.0	30.5	19.5
S1	41.0	50.5	52.5	17.5	25.0	68.5	30.5	36.0	17.5
S3	27.0	54.5	51.0	15.5	18.0	51.5	19.5	17.5	27.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.020	0.880	0.826	1.210	1.390	0.896	1.160	1.330	1.050
S5	0.880	1.140	1.070	1.030	0.722	1.040	0.822	0.811	1.050
S4	0.826	1.070	1.150	0.757	0.848	1.110	0.884	0.797	0.932
S7	1.210	1.030	0.757	0.914	1.720	0.903	1.110	0.898	0.958
S9	1.390	0.722	0.848	1.720	1.390	0.793	1.290	1.070	0.926
S6	0.896	1.040	1.110	0.903	0.793	1.060	0.960	0.956	0.865
S2	1.160	0.822	0.884	1.110	1.290	0.960	1.000	1.320	1.020
S1	1.330	0.811	0.797	0.898	1.070	0.956	1.320	1.560	0.910
S3	1.050	1.050	0.932	0.958	0.926	0.865	1.020	0.910	1.690

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 2 0.0029

plastid plastid 582 0.8584

clusters with similarity:

Cluster	Number of similarity hits

191	3
219	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

191	15	0.33
219	12	0.255
197	2	0.0374
134	1	0.0126
13100	1	0.0426

CL214 ----> CL191

No. of shared pairs: :15

CL214 ----> CL219

No. of shared pairs: :12