Cluster no. 212

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Cluster is part of supercluster: 113

Cluster characteristics:

size 739
size_real 739
ecount 6232
supercluster 113
annotations_summary 94.45% organelle/plastid
1.22% organelle/mitochondria
pair_completeness 0.919480519480519
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0013531799729364
satellite_probability 1.97433114407246e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 38
S5 154
S4 144
S7 54
S9 58
S6 155
S2 35
S1 56
S3 45
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 18.0 51.0 51.5 29.5 28.5 50.0 14.0 22.0 18.5
S5 51.0 358.0 302.0 76.5 84.5 324.0 52.0 71.5 69.0
S4 51.5 302.0 238.0 78.5 98.0 286.0 52.0 71.5 64.0
S7 29.5 76.5 78.5 36.0 32.5 73.0 23.0 36.0 26.5
S9 28.5 84.5 98.0 32.5 47.0 118.0 19.5 36.5 29.0
S6 50.0 324.0 286.0 73.0 118.0 319.0 48.5 85.0 70.0
S2 14.0 52.0 52.0 23.0 19.5 48.5 14.0 20.0 19.5
S1 22.0 71.5 71.5 36.0 36.5 85.0 20.0 46.0 37.0
S3 18.5 69.0 64.0 26.5 29.0 70.0 19.5 37.0 19.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.400 0.809 0.914 1.580 1.270 0.802 1.170 1.140 1.160
S5 0.809 1.160 1.090 0.834 0.768 1.060 0.889 0.754 0.879
S4 0.914 1.090 0.963 0.958 0.996 1.040 0.995 0.844 0.912
S7 1.580 0.834 0.958 1.320 0.996 0.805 1.330 1.280 1.140
S9 1.270 0.768 0.996 0.996 1.200 1.090 0.937 1.080 1.040
S6 0.802 1.060 1.040 0.805 1.090 1.050 0.838 0.906 0.901
S2 1.170 0.889 0.995 1.330 0.937 0.838 1.270 1.120 1.310
S1 1.140 0.754 0.844 1.280 1.080 0.906 1.120 1.580 1.540
S3 1.160 0.879 0.912 1.140 1.040 0.901 1.310 1.540 0.953

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 9 0.012
plastid plastid 698 0.945

clusters with similarity:

Cluster Number of similarity hits
234 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
176 10 0.238
234 9 0.305
46600 2 0.121
8860 1 0.0606

CL212 ----> CL176

image

No. of shared pairs: :10