Cluster no. 211

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Cluster is part of supercluster: 112

Cluster characteristics:

size 750
size_real 750
ecount 1737
supercluster 112
annotations_summary
pair_completeness 0.351351351351351
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0186666666666667
satellite_probability 2.88757405807973e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 223
S4 270
S7 0
S9 0
S6 256
S2 0
S1 0
S3 1
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0.0 0 0 0 0 0 0.0
S5 0 161 191.0 0 0 161 0 0 0.0
S4 0 191 267.0 0 0 205 0 0 0.5
S7 0 0 0.0 0 0 0 0 0 0.0
S9 0 0 0.0 0 0 0 0 0 0.0
S6 0 161 205.0 0 0 194 0 0 0.0
S2 0 0 0.0 0 0 0 0 0 0.0
S1 0 0 0.0 0 0 0 0 0 0.0
S3 0 0 0.5 0 0 0 0 0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 1.060 0.975 NA NA 0.973 NA NA 0.00
S4 NA 0.975 1.050 NA NA 0.958 NA NA 2.62
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 0.973 0.958 NA NA 1.070 NA NA 0.00
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA 0.000 2.620 NA NA 0.000 NA NA 0.00

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
73 2
20 1
41 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
298 13 0.0546
3 4 0.00133
1600 3 0.0163
6 2 0.000709
14 2 0.00112
37 2 0.00217
39 2 0.00176
1640 2 0.0107
4000 2 0.011
54800 2 0.011
63100 2 0.011
66700 2 0.011
1 1 0.000527
13 1 0.000587
19 1 0.000529
25 1 0.00107
28 1 0.000823
34 1 0.000737
35 1 0.000864
41 1 0.0013
43 1 0.000696
55 1 0.00111
61 1 0.000983
62 1 0.00167
73 1 0.00129
80 1 0.00109
90 1 0.00118
100 1 0.00164
145 1 0.00324
216 1 0.00331
252 1 0.00384
297 1 0.00416
323 1 0.00422
368 1 0.00449
369 1 0.00459
929 1 0.00529
1100 1 0.00532
1820 1 0.00539
2460 1 0.00541
3300 1 0.00549
5780 1 0.00548
6070 1 0.00548
6360 1 0.00551
7590 1 0.00549
7720 1 0.00552
7780 1 0.00549
7860 1 0.00549
8000 1 0.00549
10800 1 0.00549
11600 1 0.00551
16600 1 0.00551
17500 1 0.00551
20500 1 0.00552
27500 1 0.00552
27900 1 0.00552
43000 1 0.00552
50200 1 0.00552
60000 1 0.00552
68500 1 0.00552

CL211 ----> CL298

image

No. of shared pairs: :13