Cluster no. 210

Cluster no. 210

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Cluster is part of supercluster: 110

Cluster characteristics:

size	777
size_real	777
ecount	7705
supercluster	110
annotations_summary	0.13% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 0.13% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
pair_completeness	0.301507537688442
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00128700128700129
satellite_probability	1.1968150618018e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	0
S4	0
S7	0
S9	3
S6	1
S2	230
S1	237
S3	306

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0	0	0	0.0	0.0	0.0	0	0
S5	0	0	0	0	0.0	0.0	0.0	0	0
S4	0	0	0	0	0.0	0.0	0.0	0	0
S7	0	0	0	0	0.0	0.0	0.0	0	0
S9	0	0	0	0	0.0	0.0	3.5	4	2
S6	0	0	0	0	0.0	0.0	1.5	1	0
S2	0	0	0	0	3.5	1.5	654.0	659	888
S1	0	0	0	0	4.0	1.0	659.0	790	953
S3	0	0	0	0	2.0	0.0	888.0	953	1240

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	NA	NA	NA	NA	NA	NA	NA	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	NA	NA	NA	0.000	0.00	1.290	1.350	0.527
S6	NA	NA	NA	NA	0.000	0.00	2.100	1.280	0.000
S2	NA	NA	NA	NA	1.290	2.10	1.040	0.956	1.010
S1	NA	NA	NA	NA	1.350	1.28	0.956	1.050	0.991
S3	NA	NA	NA	NA	0.527	0.00	1.010	0.991	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.0013

Tekay Ty3-RT Tekay Ty3-RT 1 0.0013

clusters with similarity:

Cluster	Number of similarity hits

46

73

clusters connected through mates:

Cluster	Number of shared read pairs	k

46	107	0.0956
333	21	0.0827
7	5	0.00304
30	4	0.00329
85	4	0.00559
782	4	0.018
23	3	0.00224
2950	3	0.0141
27	2	0.00185
38	2	0.00162
108	2	0.00323
116	2	0.00364
125	2	0.00288
275	2	0.00733
562	2	0.00893
6680	2	0.00948
8540	2	0.0095
9840	2	0.0095
10300	2	0.0095
96	1	0.00132
110	1	0.00119
131	1	0.00182
143	1	0.0016
171	1	0.00197
174	1	0.00246
182	1	0.00262
243	1	0.0034
268	1	0.00398
403	1	0.00426
605	1	0.00454
2820	1	0.00469
4010	1	0.00472
7580	1	0.00475
8780	1	0.00475
9380	1	0.00477
9500	1	0.00477
11200	1	0.00476
11500	1	0.00476
12200	1	0.00478
13800	1	0.00478
14500	1	0.00476
14800	1	0.00478
15700	1	0.00476
16000	1	0.00476
17900	1	0.00476
21600	1	0.00477
25400	1	0.00477
25600	1	0.00477
29300	1	0.00477
38600	1	0.00477
42500	1	0.00477
49800	1	0.00477
57100	1	0.00477
59900	1	0.00477
67900	1	0.00477
68800	1	0.00477
69000	1	0.00477

CL210 ----> CL46

No. of shared pairs: :107

CL210 ----> CL333

No. of shared pairs: :21