Cluster no. 209

Cluster no. 209

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Cluster is part of supercluster: 109

Cluster characteristics:

size	784
size_real	784
ecount	3112
supercluster	109
annotations_summary	60.97% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 21.94% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 0.26% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
pair_completeness	0.513513513513513
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00127551020408163
satellite_probability	2.33736515693784e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	278
S5	0
S4	0
S7	236
S9	266
S6	2
S2	1
S1	0
S3	1

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	396.0	0	0	368.0	354.0	4.5	1.0	0	1.0
S5	0.0	0	0	0.0	0.0	0.0	0.0	0	0.0
S4	0.0	0	0	0.0	0.0	0.0	0.0	0	0.0
S7	368.0	0	0	317.0	302.0	2.5	2.5	0	0.5
S9	354.0	0	0	302.0	308.0	5.5	3.0	0	0.5
S6	4.5	0	0	2.5	5.5	1.0	0.0	0	0.0
S2	1.0	0	0	2.5	3.0	0.0	0.0	0	0.0
S1	0.0	0	0	0.0	0.0	0.0	0.0	0	0.0
S3	1.0	0	0	0.5	0.5	0.0	0.0	0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.974	NA	NA	1.030	1.010	0.922	0.426	NA	1.380
S5	NA	NA	NA	NA	NA	NA	NA	NA	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	1.030	NA	NA	1.000	0.972	0.581	1.210	NA	0.784
S9	1.010	NA	NA	0.972	1.010	1.300	1.480	NA	0.800
S6	0.922	NA	NA	0.581	1.300	17.100	0.000	NA	0.000
S2	0.426	NA	NA	1.210	1.480	0.000	0.000	NA	0.000
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	1.380	NA	NA	0.784	0.800	0.000	0.000	NA	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-INT Tekay Ty3-INT 478 0.6097

Reina Ty3-RH Reina Ty3-RH 2 0.0026

Tekay Ty3-RH Tekay Ty3-RH 172 0.2194

clusters with similarity:

Cluster	Number of similarity hits

32	6
4	3
79	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

4	43	0.0249
32	33	0.0461
53	3	0.0044
22	2	0.00114
54	2	0.00208
7290	2	0.0156
52000	2	0.0157
55500	2	0.0157
9	1	0.00121
11	1	0.000732
21	1	0.00166
65	1	0.00189
75	1	0.00137
83	1	0.002
246	1	0.00458
7300	1	0.00784
13800	1	0.00784
31100	1	0.00787
32600	1	0.00787
37500	1	0.00787

CL209 ----> CL4

No. of shared pairs: :43

CL209 ----> CL32

No. of shared pairs: :33