Cluster no. 208

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Cluster is part of supercluster: 108

Cluster characteristics:

size 787
size_real 787
ecount 2863
supercluster 108
annotations_summary
pair_completeness 0.36159169550173
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0419313850063532
satellite_probability 1.12309779384282e-18
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 288
S4 255
S7 0
S9 0
S6 244
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0 0 0 0 0 0
S5 0 371 310 0 0 325 0 0 0
S4 0 310 312 0 0 304 0 0 0
S7 0 0 0 0 0 0 0 0 0
S9 0 0 0 0 0 0 0 0 0
S6 0 325 304 0 0 303 0 0 0
S2 0 0 0 0 0 0 0 0 0
S1 0 0 0 0 0 0 0 0 0
S3 0 0 0 0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 1.050 0.953 NA NA 0.993 NA NA NA
S4 NA 0.953 1.040 NA NA 1.010 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 0.993 1.010 NA NA 1.000 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
6 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
689 11 0.0551
1190 4 0.0208
2780 4 0.0212
6570 4 0.0214
5070 3 0.016
19700 3 0.0161
1 2 0.00105
6 2 0.000707
90 2 0.00234
242 2 0.00664
2880 2 0.0107
5250 2 0.0107
8390 2 0.0107
13900 2 0.0108
18800 2 0.0108
25400 2 0.0108
29500 2 0.0108
37000 2 0.0108
59000 2 0.0108
3 1 0.000333
29 1 0.000818
35 1 0.000861
37 1 0.00108
39 1 0.000875
43 1 0.000693
48 1 0.000863
61 1 0.000978
87 1 0.00124
88 1 0.0012
93 1 0.00119
95 1 0.00137
128 1 0.00124
141 1 0.00277
368 1 0.00441
1180 1 0.00518
1510 1 0.00529
2580 1 0.00531
3590 1 0.00532
4610 1 0.00536
5920 1 0.00535
6550 1 0.00538
9600 1 0.00536
10800 1 0.00536
11600 1 0.00538
12100 1 0.00538
12700 1 0.00538
14600 1 0.00538
34400 1 0.00539
39900 1 0.00539
41600 1 0.00539
48000 1 0.00539
50700 1 0.00539
51400 1 0.00539
54000 1 0.00539
55200 1 0.00539
58600 1 0.00539
67900 1 0.00539
68400 1 0.00539

CL208 ----> CL689

image

No. of shared pairs: :11