Cluster no. 207

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Cluster is part of supercluster: 107

Cluster characteristics:

size 791
size_real 791
ecount 6177
supercluster 107
annotations_summary 99.62% organelle/plastid
0.38% organelle/mitochondria
0.13% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
pair_completeness 0.910628019323672
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00126422250316056
satellite_probability 2.49088588504597e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 63
S5 163
S4 153
S7 64
S9 65
S6 152
S2 30
S1 35
S3 66
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 53.0 102.0 97.0 42.0 39.5 89.0 22.0 15.0 50.0
S5 102.0 259.0 252.0 92.0 106.0 250.0 40.5 55.5 108.0
S4 97.0 252.0 240.0 90.5 82.0 238.0 42.0 56.5 106.0
S7 42.0 92.0 90.5 47.0 31.5 94.5 18.0 24.0 50.0
S9 39.5 106.0 82.0 31.5 45.0 79.5 16.0 20.5 39.5
S6 89.0 250.0 238.0 94.5 79.5 238.0 40.0 64.5 92.0
S2 22.0 40.5 42.0 18.0 16.0 40.0 7.0 14.0 24.0
S1 15.0 55.5 56.5 24.0 20.5 64.5 14.0 24.0 30.0
S3 50.0 108.0 106.0 50.0 39.5 92.0 24.0 30.0 38.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.260 0.978 0.977 1.040 1.040 0.911 1.190 0.598 1.130
S5 0.978 1.000 1.020 0.918 1.120 1.030 0.885 0.891 0.986
S4 0.977 1.020 1.020 0.949 0.917 1.030 0.964 0.954 1.010
S7 1.040 0.918 0.949 1.210 0.866 1.010 1.020 0.996 1.170
S9 1.040 1.120 0.917 0.866 1.320 0.903 0.963 0.907 0.989
S6 0.911 1.030 1.030 1.010 0.903 1.050 0.933 1.110 0.892
S2 1.190 0.885 0.964 1.020 0.963 0.933 0.866 1.270 1.230
S1 0.598 0.891 0.954 0.996 0.907 1.110 1.270 1.600 1.130
S3 1.130 0.986 1.010 1.170 0.989 0.892 1.230 1.130 0.812

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 3 0.0038
plastid plastid 788 0.9962
TatV Ty3-INT TatV Ty3-INT 1 0.0013

clusters with similarity:

Cluster Number of similarity hits
218 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
187 9 0.165
218 7 0.222
56 1 0.00156
149 1 0.00727
24100 1 0.0513
47400 1 0.0513
49600 1 0.0513
64800 1 0.0513