Cluster no. 205

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Cluster is part of supercluster: 105

Cluster characteristics:

size 819
size_real 819
ecount 3462
supercluster 105
annotations_summary 0.12% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness 0.731501057082452
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00122100122100122
satellite_probability 9.81425038973844e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 287
S5 5
S4 2
S7 239
S9 276
S6 2
S2 3
S1 0
S3 5
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 408.0 1.5 6.0 352.0 422.0 3.5 6.5 0 6.5
S5 1.5 2.0 0.0 4.0 2.5 0.0 0.0 0 0.5
S4 6.0 0.0 0.0 4.5 4.0 0.0 0.0 0 0.5
S7 352.0 4.0 4.5 271.0 339.0 4.5 7.5 0 4.0
S9 422.0 2.5 4.0 339.0 414.0 2.5 8.0 0 5.0
S6 3.5 0.0 0.0 4.5 2.5 0.0 0.0 0 0.0
S2 6.5 0.0 0.0 7.5 8.0 0.0 0.0 0 0.0
S1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0.0
S3 6.5 0.5 0.5 4.0 5.0 0.0 0.0 0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.973 0.410 1.150 1.020 1.010 0.958 0.849 NA 1.130
S5 0.410 62.800 0.000 1.340 0.689 0.000 0.000 NA 9.990
S4 1.150 0.000 0.000 1.050 0.772 0.000 0.000 NA 6.990
S7 1.020 1.340 1.050 0.965 0.995 1.500 1.200 NA 0.851
S9 1.010 0.689 0.772 0.995 1.000 0.689 1.050 NA 0.877
S6 0.958 0.000 0.000 1.500 0.689 0.000 0.000 NA 0.000
S2 0.849 0.000 0.000 1.200 1.050 0.000 0.000 NA 0.000
S1 NA NA NA NA NA NA NA NA NA
S3 1.130 9.990 6.990 0.851 0.877 0.000 0.000 NA 0.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RT Ale Ty1-RT 1 0.0012

clusters with similarity:

Cluster Number of similarity hits
163 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
163 15 0.115
808 8 0.108
2210 4 0.0597
2380 4 0.0593
4 3 0.00181
1780 3 0.0441
3010 3 0.0451
5540 3 0.0455
12100 3 0.0462
4120 2 0.0299
5430 2 0.0305
6050 2 0.0303
6730 2 0.0303
18000 2 0.0308
21400 2 0.031
22800 2 0.031
33800 2 0.031
41300 2 0.031
12 1 0.000797
59 1 0.000808
262 1 0.0093
1880 1 0.0153
3960 1 0.0152
4360 1 0.0153
4770 1 0.0153
6670 1 0.0152
11000 1 0.0155
11500 1 0.0154
12300 1 0.0154
13200 1 0.0154
15900 1 0.0156
25300 1 0.0155
27100 1 0.0155
27900 1 0.0155
28800 1 0.0155
30800 1 0.0155
38500 1 0.0155
57200 1 0.0155
61100 1 0.0155
67400 1 0.0155

CL205 ----> CL163

image

No. of shared pairs: :15