Cluster no. 204

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Cluster is part of supercluster: 104

Cluster characteristics:

size 831
size_real 831
ecount 5791
supercluster 104
annotations_summary 90.25% organelle/plastid
1.56% organelle/mitochondria
pair_completeness 0.910344827586207
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00120336943441637
satellite_probability 2.49088588504597e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 64
S5 184
S4 165
S7 60
S9 50
S6 155
S2 58
S1 36
S3 59
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 48.0 75.5 60.5 27.5 30.0 50.5 23.0 16.0 43.0
S5 75.5 361.0 274.0 103.0 76.5 280.0 83.5 51.0 69.0
S4 60.5 274.0 267.0 55.5 45.0 254.0 64.5 47.5 62.0
S7 27.5 103.0 55.5 48.0 26.5 58.5 34.0 21.0 23.5
S9 30.0 76.5 45.0 26.5 32.0 67.0 21.0 19.0 31.5
S6 50.5 280.0 254.0 58.5 67.0 291.0 66.5 44.0 61.0
S2 23.0 83.5 64.5 34.0 21.0 66.5 35.0 19.5 32.5
S1 16.0 51.0 47.5 21.0 19.0 44.0 19.5 11.0 15.5
S3 43.0 69.0 62.0 23.5 31.5 61.0 32.5 15.5 33.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.990 0.851 0.829 1.070 1.330 0.667 0.938 1.010 1.790
S5 0.851 1.110 1.020 1.090 0.926 1.010 0.928 0.879 0.784
S4 0.829 1.020 1.210 0.716 0.662 1.110 0.871 0.996 0.856
S7 1.070 1.090 0.716 1.760 1.110 0.727 1.310 1.250 0.923
S9 1.330 0.926 0.662 1.110 1.530 0.950 0.920 1.290 1.410
S6 0.667 1.010 1.110 0.727 0.950 1.230 0.865 0.889 0.812
S2 0.938 0.928 0.871 1.310 0.920 0.865 1.410 1.220 1.340
S1 1.010 0.879 0.996 1.250 1.290 0.889 1.220 1.070 0.990
S3 1.790 0.784 0.856 0.923 1.410 0.812 1.340 0.990 1.390

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 13 0.016
plastid plastid 750 0.903

clusters with similarity:

Cluster Number of similarity hits
215 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
156 12 0.207
215 10 0.238
23 1 0.000869
47 1 0.00103
61 1 0.00117
164 1 0.0156
219 1 0.023
4550 1 0.0444

CL204 ----> CL156

image

No. of shared pairs: :12

CL204 ----> CL215

image

No. of shared pairs: :10