Cluster no. 201

Cluster no. 201

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Cluster is part of supercluster: 101

Cluster characteristics:

size	853
size_real	853
ecount	6011
supercluster	101
annotations_summary	97.30% organelle/plastid
pair_completeness	0.895555555555556
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00117233294255569
satellite_probability	3.13317635625349e-24
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	69
S5	160
S4	165
S7	62
S9	55
S6	167
S2	71
S1	54
S3	50

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	37.0	77.5	78.0	36.5	32.0	85.0	46.0	23.0	27.5
S5	77.5	287.0	238.0	57.0	64.5	243.0	87.0	55.5	58.5
S4	78.0	238.0	269.0	72.5	75.0	262.0	99.0	64.5	63.0
S7	36.5	57.0	72.5	28.0	29.5	80.0	38.5	28.5	32.0
S9	32.0	64.5	75.0	29.5	27.0	73.0	34.0	25.0	18.5
S6	85.0	243.0	262.0	80.0	73.0	248.0	100.0	64.5	60.0
S2	46.0	87.0	99.0	38.5	34.0	100.0	38.0	33.5	34.5
S1	23.0	55.5	64.5	28.5	25.0	64.5	33.5	28.0	16.5
S3	27.5	58.5	63.0	32.0	18.5	60.0	34.5	16.5	22.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.140	0.901	0.867	1.230	1.150	0.950	1.220	0.922	1.120
S5	0.901	1.260	1.000	0.728	0.877	1.030	0.877	0.842	0.905
S4	0.867	1.000	1.080	0.886	0.975	1.060	0.954	0.936	0.932
S7	1.230	0.728	0.886	1.040	1.160	0.983	1.130	1.260	1.440
S9	1.150	0.877	0.975	1.160	1.130	0.954	1.060	1.170	0.884
S6	0.950	1.030	1.060	0.983	0.954	1.010	0.969	0.941	0.892
S2	1.220	0.877	0.954	1.130	1.060	0.969	0.876	1.160	1.220
S1	0.922	0.842	0.936	1.260	1.170	0.941	1.160	1.460	0.880
S3	1.120	0.905	0.932	1.440	0.884	0.892	1.220	0.880	1.200

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 830 0.97

clusters with similarity:

Cluster	Number of similarity hits

160	3
197	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

197	19	0.352
160	10	0.163
14	1	0.000613
94	1	0.00276
118	1	0.00211
134	1	0.0125
164	1	0.0147
176	1	0.02
222	1	0.00844

CL201 ----> CL197

No. of shared pairs: :19

CL201 ----> CL160

No. of shared pairs: :10