Cluster no. 200

Cluster no. 200

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Cluster is part of supercluster: 30

Cluster characteristics:

size	873
size_real	873
ecount	9471
supercluster	30
annotations_summary	2.86% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT 1.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 0.11% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-GAG
pair_completeness	0.570143884892086
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0011454753722795
satellite_probability	1.13992396794032e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	0
S4	0
S7	0
S9	0
S6	0
S2	307
S1	293
S3	273

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0	0	0	0	0	0	0	0
S5	0	0	0	0	0	0	0	0	0
S4	0	0	0	0	0	0	0	0	0
S7	0	0	0	0	0	0	0	0	0
S9	0	0	0	0	0	0	0	0	0
S6	0	0	0	0	0	0	0	0	0
S2	0	0	0	0	0	0	1100	1170	1010
S1	0	0	0	0	0	0	1170	1230	960
S3	0	0	0	0	0	0	1010	960	869

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	NA	NA	NA	NA	NA	NA	NA	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	NA	NA	NA	NA	NA	NA	NA	NA	NA
S2	NA	NA	NA	NA	NA	NA	0.973	1.000	1.030
S1	NA	NA	NA	NA	NA	NA	1.000	1.030	0.954
S3	NA	NA	NA	NA	NA	NA	1.030	0.954	1.020

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

SIRE Ty1-INT SIRE Ty1-INT 9 0.0103

SIRE Ty1-PROT SIRE Ty1-PROT 25 0.0286

Selgy Ty3-GAG Selgy Ty3-GAG 1 0.0011

clusters with similarity:

Cluster	Number of similarity hits

113	21
196	6
182	4

clusters connected through mates:

Cluster	Number of shared read pairs	k

113	56	0.112
196	42	0.152
182	28	0.0959
168	2	0.00471
4810	2	0.0166
9060	2	0.0165
11500	2	0.0165
65900	2	0.0166
50	1	0.00304
64	1	0.00106
286	1	0.00619
563	1	0.00794
879	1	0.00784
1240	1	0.00791
5470	1	0.00816
9100	1	0.00823
18900	1	0.00826
42500	1	0.0083
45700	1	0.0083

CL200 ----> CL113

No. of shared pairs: :56

CL200 ----> CL196

No. of shared pairs: :42

CL200 ----> CL182

No. of shared pairs: :28