Cluster no. 199

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Cluster is part of supercluster: 100

Cluster characteristics:

size 875
size_real 875
ecount 6604
supercluster 100
annotations_summary 6.40% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.91% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
pair_completeness 0.647834274952919
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.374857142857143
satellite_probability 6.06495082169742e-08
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 282
S5 4
S4 0
S7 283
S9 297
S6 5
S2 2
S1 2
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 827.0 18.0 0 724 736.0 22 2.0 8.5 0
S5 18.0 0.0 0 15 13.0 0 0.0 0.5 0
S4 0.0 0.0 0 0 0.0 0 0.0 0.0 0
S7 724.0 15.0 0 634 666.0 14 2.0 9.0 0
S9 736.0 13.0 0 666 637.0 18 1.5 3.5 0
S6 22.0 0.0 0 14 18.0 0 0.0 0.0 0
S2 2.0 0.0 0 2 1.5 0 0.0 0.0 0
S1 8.5 0.5 0 9 3.5 0 0.0 0.0 0
S3 0.0 0.0 0 0 0.0 0 0.0 0.0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.999 1.09 NA 0.991 1.000 1.15 1.030 1.120 NA
S5 1.090 0.00 NA 1.030 0.890 0.00 0.000 3.300 NA
S4 NA NA NA NA NA NA NA NA NA
S7 0.991 1.03 NA 0.983 1.030 0.83 1.160 1.340 NA
S9 1.000 0.89 NA 1.030 0.977 1.06 0.868 0.518 NA
S6 1.150 0.00 NA 0.830 1.060 0.00 0.000 0.000 NA
S2 1.030 0.00 NA 1.160 0.868 0.00 0.000 0.000 NA
S1 1.120 3.30 NA 1.340 0.518 0.00 0.000 0.000 NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatV Ty3-GAG TatV Ty3-GAG 56 0.0640
Tcn1 Ty3-INT Tcn1 Ty3-INT 8 0.0091

clusters connected through mates:

Cluster Number of shared
read pairs		 k
265 4 0.0258
1230 4 0.041
4 3 0.00177
529 3 0.0294
8840 3 0.0314
11 2 0.0015
12 2 0.00156
1060 2 0.02
3390 2 0.0209
6030 2 0.0208
6100 2 0.0211
7490 2 0.0212
10500 2 0.0209
14900 2 0.0211
28600 2 0.0212
53100 2 0.0212
22 1 0.000581
53 1 0.00154
54 1 0.00108
83 1 0.00213
91 1 0.00134
106 1 0.00201
140 1 0.00187
182 1 0.00376
246 1 0.00538
280 1 0.00621
320 1 0.00725
3070 1 0.0105
5770 1 0.0104
7400 1 0.0105
7540 1 0.0105
8220 1 0.0105
13300 1 0.0105
17200 1 0.0105
18200 1 0.0106
18800 1 0.0106
23300 1 0.0106
38300 1 0.0106
43900 1 0.0106
48100 1 0.0106
48200 1 0.0106
50100 1 0.0106
63100 1 0.0106
68300 1 0.0106