Cluster no. 198

Cluster no. 198

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Cluster is part of supercluster: 66

Cluster characteristics:

size	920
size_real	920
ecount	8277
supercluster	66
annotations_summary	0.22% organelle/mitochondria
pair_completeness	0.433021806853583
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00108695652173913
satellite_probability	5.12148319141113e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	310
S5	5
S4	0
S7	286
S9	315
S6	3
S2	0
S1	1
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	705.0	23.5	0	804.0	916.0	12.0	0	2.0	0
S5	23.5	0.0	0	26.5	28.0	1.0	0	0.0	0
S4	0.0	0.0	0	0.0	0.0	0.0	0	0.0	0
S7	804.0	26.5	0	822.0	966.0	15.5	0	0.5	0
S9	916.0	28.0	0	966.0	1120.0	16.0	0	4.5	0
S6	12.0	1.0	0	15.5	16.0	0.0	0	0.0	0
S2	0.0	0.0	0	0.0	0.0	0.0	0	0.0	0
S1	2.0	0.0	0	0.5	4.5	0.0	0	0.0	0
S3	0.0	0.0	0	0.0	0.0	0.0	0	0.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.963	1.000	NA	1.030	1.010	0.907	NA	0.961	NA
S5	1.000	0.000	NA	1.050	0.962	2.350	NA	0.000	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	1.030	1.050	NA	0.980	0.995	1.090	NA	0.224	NA
S9	1.010	0.962	NA	0.995	0.996	0.976	NA	1.740	NA
S6	0.907	2.350	NA	1.090	0.976	0.000	NA	0.000	NA
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	0.961	0.000	NA	0.224	1.740	0.000	NA	0.000	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 2 0.0022

clusters with similarity:

Cluster	Number of similarity hits

22	45
54	19
173	8
68	4

clusters connected through mates:

Cluster	Number of shared read pairs	k

173	61	0.157
22	42	0.0232
68	19	0.0196
11	14	0.00984
54	4	0.00393
3860	3	0.0162
4920	3	0.0163
5340	3	0.0162
8	2	0.001
17	2	0.00111
3320	2	0.0108
5510	2	0.0108
9850	2	0.0109
14200	2	0.0109
15800	2	0.0109
16400	2	0.0109
17500	2	0.0109
25200	2	0.0109
34800	2	0.0109
35700	2	0.0109
42200	2	0.0109
44600	2	0.0109
53100	2	0.0109
4	1	0.000562
5	1	0.00049
36	1	0.00089
51	1	0.000719
53	1	0.00135
59	1	0.000737
69	1	0.000766
107	1	0.00133
206	1	0.00275
591	1	0.00533
3980	1	0.00542
4010	1	0.00545
7060	1	0.00542
9300	1	0.00546
9730	1	0.00546
11300	1	0.00545
11300	1	0.00548
11900	1	0.00545
12900	1	0.00548
13400	1	0.00548
13500	1	0.00545
14400	1	0.00545
14600	1	0.00545
15900	1	0.00545
19300	1	0.00545
31000	1	0.00546
33700	1	0.00546
33800	1	0.00546
34700	1	0.00546
38800	1	0.00546
40400	1	0.00546
40500	1	0.00546
43900	1	0.00546
47000	1	0.00546
49400	1	0.00546
53000	1	0.00546
53500	1	0.00546
58700	1	0.00546
58800	1	0.00546
65200	1	0.00546
67000	1	0.00546
69400	1	0.00546

CL198 ----> CL173

No. of shared pairs: :61

CL198 ----> CL22

No. of shared pairs: :42

CL198 ----> CL68

No. of shared pairs: :19

CL198 ----> CL11

No. of shared pairs: :14