Cluster no. 197

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Cluster is part of supercluster: 99

Cluster characteristics:

size 929
size_real 929
ecount 6083
supercluster 99
annotations_summary 84.39% organelle/plastid
pair_completeness 0.876767676767677
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00107642626480086
satellite_probability 4.91298606542926e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 73
S5 182
S4 196
S7 63
S9 80
S6 142
S2 58
S1 54
S3 81
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 54.0 58.5 86.5 35.0 56.5 54.0 38.5 27.0 44.0
S5 58.5 274.0 308.0 66.5 80.0 203.0 66.5 57.0 100.0
S4 86.5 308.0 339.0 73.5 106.0 204.0 63.5 70.5 102.0
S7 35.0 66.5 73.5 29.0 36.5 44.0 31.5 27.5 40.5
S9 56.5 80.0 106.0 36.5 56.0 55.0 36.5 33.0 43.0
S6 54.0 203.0 204.0 44.0 55.0 141.0 54.5 47.0 71.5
S2 38.5 66.5 63.5 31.5 36.5 54.5 36.0 33.0 43.5
S1 27.0 57.0 70.5 27.5 33.0 47.0 33.0 22.0 42.0
S3 44.0 100.0 102.0 40.5 43.0 71.5 43.5 42.0 54.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.590 0.646 0.857 1.220 1.510 0.828 1.280 1.010 1.090
S5 0.646 1.130 1.140 0.868 0.798 1.160 0.826 0.796 0.928
S4 0.857 1.140 1.130 0.861 0.949 1.050 0.708 0.883 0.845
S7 1.220 0.868 0.861 1.200 1.150 0.797 1.240 1.210 1.190
S9 1.510 0.798 0.949 1.150 1.350 0.762 1.100 1.110 0.964
S6 0.828 1.160 1.050 0.797 0.762 1.120 0.940 0.911 0.922
S2 1.280 0.826 0.708 1.240 1.100 0.940 1.350 1.390 1.210
S1 1.010 0.796 0.883 1.210 1.110 0.911 1.390 1.040 1.320
S3 1.090 0.928 0.845 1.190 0.964 0.922 1.210 1.320 1.130

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 784 0.84

clusters with similarity:

Cluster Number of similarity hits
201 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
201 19 0.352
160 9 0.131
6520 3 0.0909
8820 3 0.0923
214 2 0.0374
75 1 0.00157
78 1 0.000892
83 1 0.00247
90 1 0.00143
134 1 0.0115
156 1 0.0145
164 1 0.0133
191 1 0.0189
408 1 0.026
15400 1 0.0312

CL197 ----> CL201

image

No. of shared pairs: :19