Cluster no. 196

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Cluster is part of supercluster: 30

Cluster characteristics:

size 934
size_real 934
ecount 10499
supercluster 30
annotations_summary 12.74% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
pair_completeness 0.499197431781701
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00321199143468951
satellite_probability 2.60623974767306e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 0
S4 0
S7 1
S9 0
S6 4
S2 323
S1 285
S3 321
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0.0 0 0.0 0.0 0.0 0
S5 0 0 0 0.0 0 0.0 0.0 0.0 0
S4 0 0 0 0.0 0 0.0 0.0 0.0 0
S7 0 0 0 0.0 0 0.0 2.0 3.5 2
S9 0 0 0 0.0 0 0.0 0.0 0.0 0
S6 0 0 0 0.0 0 0.0 14.5 11.5 11
S2 0 0 0 2.0 0 14.5 1320.0 1060.0 1310
S1 0 0 0 3.5 0 11.5 1060.0 871.0 1070
S3 0 0 0 2.0 0 11.0 1310.0 1070.0 1330
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 NA NA NA 0.000 NA 0.000 0.755 1.620 0.751
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA 0.000 NA 0.000 1.110 1.080 0.837
S2 NA NA NA 0.755 NA 1.110 1.010 0.995 0.997
S1 NA NA NA 1.620 NA 1.080 0.995 1.000 1.000
S3 NA NA NA 0.751 NA 0.837 0.997 1.000 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-GAG SIRE Ty1-GAG 119 0.1274
Tcn1 Ty3-INT Tcn1 Ty3-INT 1 0.0011

clusters with similarity:

Cluster Number of similarity hits
200 6
182 3

clusters connected through mates:

Cluster Number of shared
read pairs		 k
200 42 0.152
182 7 0.0213
100 3 0.00514
85 2 0.00302
113 2 0.00372
5170 2 0.0126
18700 2 0.0127
34100 2 0.0127
36200 2 0.0127
68800 2 0.0127
38 1 0.000845
46 1 0.000937
50 1 0.00274
96 1 0.00142
110 1 0.00127
125 1 0.00156
129 1 0.00257
131 1 0.00202
152 1 0.00193
174 1 0.00282
180 1 0.00548
284 1 0.00536
410 1 0.00608
1710 1 0.00615
5320 1 0.00637
6300 1 0.00635
9060 1 0.00633
9890 1 0.00633
10300 1 0.00633
10400 1 0.00633
10700 1 0.00637
11600 1 0.00639
14900 1 0.00639
15100 1 0.00639
15500 1 0.00635
15600 1 0.00635
24300 1 0.00637
28600 1 0.00637
31600 1 0.00637
32600 1 0.00637
46800 1 0.00637
57700 1 0.00637
59300 1 0.00637
67500 1 0.00637

CL196 ----> CL200

image

No. of shared pairs: :42