Cluster no. 194

Cluster no. 194

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Cluster is part of supercluster: 97

Cluster characteristics:

size	981
size_real	981
ecount	6357
supercluster	97
annotations_summary	30.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT 12.64% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH 11.82% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
pair_completeness	0.668367346938776
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00101936799184506
satellite_probability	2.69560262167269e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	49
S5	250
S4	222
S7	32
S9	50
S6	225
S2	40
S1	48
S3	65

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	65.0	0.5	2.0	37.5	62.0	4.5	0.0	0.0	0.5
S5	0.5	747.0	648.0	0.0	0.5	623.0	4.0	0.0	1.5
S4	2.0	648.0	620.0	1.0	1.0	540.0	3.0	1.0	0.5
S7	37.5	0.0	1.0	14.0	41.0	2.0	0.0	0.0	0.5
S9	62.0	0.5	1.0	41.0	59.0	3.0	1.5	1.5	2.5
S6	4.5	623.0	540.0	2.0	3.0	516.0	4.5	0.0	0.0
S2	0.0	4.0	3.0	0.0	1.5	4.5	25.0	31.5	41.5
S1	0.0	0.0	1.0	0.0	1.5	0.0	31.5	31.0	47.5
S3	0.5	1.5	0.5	0.5	2.5	0.0	41.5	47.5	63.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	14.00000	0.00913	0.0407	14.4000	13.30000	0.0982	0.0000	0.0000	0.1170
S5	0.00913	1.16000	1.1200	0.0000	0.00913	1.1500	0.1130	0.0000	0.0299
S4	0.04070	1.12000	1.1900	0.0364	0.02030	1.1200	0.0945	0.0311	0.0111
S7	14.40000	0.00000	0.0364	9.6600	15.80000	0.0782	0.0000	0.0000	0.2100
S9	13.30000	0.00913	0.0203	15.8000	12.70000	0.0655	0.4990	0.4930	0.5870
S6	0.09820	1.15000	1.1200	0.0782	0.06550	1.1400	0.1520	0.0000	0.0000
S2	0.00000	0.11300	0.0945	0.0000	0.49900	0.1520	12.9000	16.0000	15.1000
S1	0.00000	0.00000	0.0311	0.0000	0.49300	0.0000	16.0000	15.6000	17.0000
S3	0.11700	0.02990	0.0111	0.2100	0.58700	0.0000	15.1000	17.0000	16.1000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Athila Ty3-INT Athila Ty3-INT 295 0.30

Athila Ty3-RH Athila Ty3-RH 124 0.13

Athila Ty3-RT Athila Ty3-RT 116 0.12

clusters connected through mates:

Cluster	Number of shared read pairs	k

100	23	0.0438
285	16	0.131
255	13	0.0963
7230	5	0.05
728	4	0.0369
1680	3	0.0291
2460	3	0.0293
58	2	0.00297
53600	2	0.0203
63100	2	0.0203
8	1	0.000523
15	1	0.000422
37	1	0.00119
41	1	0.00146
64	1	0.00108
66	1	0.00112
67	1	0.00105
76	1	0.00156
84	1	0.00119
88	1	0.00133
90	1	0.0013
108	1	0.00197
110	1	0.00137
130	1	0.00199
132	1	0.0046
291	1	0.00593
642	1	0.00962
721	1	0.00913
1180	1	0.00971
4900	1	0.0101
5620	1	0.01
9910	1	0.0102
12300	1	0.0101
19400	1	0.0101
70800	1	0.0102

CL194 ----> CL100

No. of shared pairs: :23

CL194 ----> CL285

No. of shared pairs: :16

CL194 ----> CL255

No. of shared pairs: :13