Cluster no. 192

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Cluster is part of supercluster: 95

Cluster characteristics:

size 995
size_real 995
ecount 6482
supercluster 95
annotations_summary 0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.478454680534918
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00100502512562814
satellite_probability 3.21043016719236e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 349
S5 1
S4 6
S7 321
S9 315
S6 0
S2 3
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 867.0 4.0 19.0 756.0 740.0 0 0.5 0 0
S5 4.0 0.0 0.0 2.5 2.5 0 0.0 0 0
S4 19.0 0.0 1.0 12.5 12.0 0 0.0 0 0
S7 756.0 2.5 12.5 650.0 611.0 0 0.0 0 0
S9 740.0 2.5 12.0 611.0 639.0 0 1.5 0 0
S6 0.0 0.0 0.0 0.0 0.0 0 0.0 0 0
S2 0.5 0.0 0.0 0.0 1.5 0 1.0 0 0
S1 0.0 0.0 0.0 0.0 0.0 0 0.0 0 0
S3 0.0 0.0 0.0 0.0 0.0 0 0.0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.986 1.210 1.160 1.010 1.000 NA 0.453 NA NA
S5 1.210 0.000 0.000 0.886 0.898 NA 0.000 NA NA
S4 1.160 0.000 3.270 0.896 0.871 NA 0.000 NA NA
S7 1.010 0.886 0.896 1.020 0.971 NA 0.000 NA NA
S9 1.000 0.898 0.871 0.971 1.030 NA 1.620 NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 0.453 0.000 0.000 0.000 1.620 NA 720.000 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-INT Reina Ty3-INT 1 0.001

clusters connected through mates:

Cluster Number of shared
read pairs		 k
397 6 0.0318
3160 5 0.028
11000 3 0.0169
19400 3 0.0169
4 2 0.00113
12 2 0.00146
18 2 0.0014
32 2 0.00261
270 2 0.0084
5160 2 0.0113
8350 2 0.0113
11200 2 0.0113
11200 2 0.0113
11600 2 0.0113
18400 2 0.0113
43600 2 0.0113
53000 2 0.0113
58100 2 0.0113
59200 2 0.0113
65300 2 0.0113
5 1 0.000491
8 1 0.000502
11 1 0.000706
22 1 0.000555
40 1 0.00134
51 1 0.000723
65 1 0.00172
68 1 0.00104
74 1 0.00199
103 1 0.00234
280 1 0.00412
379 1 0.00494
405 1 0.0051
591 1 0.00552
1640 1 0.00557
2220 1 0.00559
4540 1 0.0056
7860 1 0.00563
8280 1 0.00563
8470 1 0.00567
9720 1 0.00563
13200 1 0.00568
14200 1 0.00565
14600 1 0.00565
14900 1 0.00565
16100 1 0.00568
16400 1 0.00565
17100 1 0.00565
18400 1 0.00565
18900 1 0.00568
21600 1 0.00567
23300 1 0.00567
32400 1 0.00567
38000 1 0.00567
39200 1 0.00567
39400 1 0.00567
42300 1 0.00567
42400 1 0.00567
45600 1 0.00567
50100 1 0.00567
55800 1 0.00567