Cluster no. 191

Cluster no. 191

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Cluster is part of supercluster: 94

Cluster characteristics:

size	1001
size_real	1001
ecount	7979
supercluster	94
annotations_summary	98.00% organelle/plastid 1.00% organelle/mitochondria
pair_completeness	0.91395793499044
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000999000999000999
satellite_probability	2.49088588504597e-24
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	51
S5	235
S4	169
S7	75
S9	67
S6	215
S2	64
S1	84
S3	41

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	25.0	96.0	65.0	36.5	30.0	69.5	37.5	29.0	19.5
S5	96.0	507.0	318.0	131.0	128.0	406.0	114.0	116.0	65.5
S4	65.0	318.0	247.0	95.0	79.5	335.0	88.5	106.0	61.5
S7	36.5	131.0	95.0	37.0	48.0	116.0	47.5	46.0	25.5
S9	30.0	128.0	79.5	48.0	45.0	98.0	44.5	32.0	24.5
S6	69.5	406.0	335.0	116.0	98.0	406.0	97.0	124.0	73.5
S2	37.5	114.0	88.5	47.5	44.5	97.0	48.0	29.5	26.0
S1	29.0	116.0	106.0	46.0	32.0	124.0	29.5	56.0	36.0
S3	19.5	65.5	61.5	25.5	24.5	73.5	26.0	36.0	17.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.200	0.998	0.910	1.230	1.110	0.788	1.380	0.985	1.090
S5	0.998	1.140	0.967	0.954	1.020	0.997	0.911	0.858	0.796
S4	0.910	0.967	1.010	0.933	0.859	1.110	0.949	1.060	1.010
S7	1.230	0.954	0.933	0.872	1.240	0.918	1.220	1.100	1.000
S9	1.110	1.020	0.859	1.240	1.280	0.857	1.260	0.839	1.060
S6	0.788	0.997	1.110	0.918	0.857	1.090	0.842	0.997	0.975
S2	1.380	0.911	0.949	1.220	1.260	0.842	1.350	0.767	1.120
S1	0.985	0.858	1.060	1.100	0.839	0.997	0.767	1.350	1.430
S3	1.090	0.796	1.010	1.000	1.060	0.975	1.120	1.430	1.110

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 10 0.01

plastid plastid 981 0.98

clusters with similarity:

Cluster	Number of similarity hits

214	3
215	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

214	15	0.33
215	14	0.311
10	1	0.000624
34	1	0.000834
156	1	0.0164
164	1	0.0149
197	1	0.0189
10100	1	0.0408

CL191 ----> CL214

No. of shared pairs: :15

CL191 ----> CL215

No. of shared pairs: :14