Cluster no. 190

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Cluster is part of supercluster: 93

Cluster characteristics:

size 1012
size_real 1012
ecount 8522
supercluster 93
annotations_summary 33.10% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.10% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
pair_completeness 0.747841105354059
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000988142292490119
satellite_probability 6.84243327814155e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 30
S5 259
S4 312
S7 21
S9 21
S6 236
S2 54
S1 36
S3 43
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 7.0 5.5 4.5 7.5 6.5 4.5 12.0 10.5 6.0
S5 5.5 770.0 978.0 2.5 11.0 694.0 8.5 18.0 27.5
S4 4.5 978.0 1190.0 2.5 22.0 878.0 9.5 19.5 46.0
S7 7.5 2.5 2.5 5.0 6.5 2.0 7.0 4.0 2.0
S9 6.5 11.0 22.0 6.5 6.0 17.0 5.5 6.5 6.5
S6 4.5 694.0 878.0 2.0 17.0 584.0 5.0 18.0 33.5
S2 12.0 8.5 9.5 7.0 5.5 5.0 35.0 14.5 25.0
S1 10.5 18.0 19.5 4.0 6.5 18.0 14.5 20.0 16.0
S3 6.0 27.5 46.0 2.0 6.5 33.5 25.0 16.0 17.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 14.600 0.291 0.190 25.600 9.890 0.268 13.100 11.000 4.450
S5 0.291 1.040 1.050 0.217 0.426 1.050 0.236 0.480 0.519
S4 0.190 1.050 1.020 0.173 0.679 1.060 0.210 0.415 0.693
S7 25.600 0.217 0.173 28.000 16.200 0.196 12.500 6.880 2.430
S9 9.890 0.426 0.679 16.200 6.680 0.741 4.390 4.980 3.530
S6 0.268 1.050 1.060 0.196 0.741 0.996 0.156 0.540 0.712
S2 13.100 0.236 0.210 12.500 4.390 0.156 20.000 7.980 9.730
S1 11.000 0.480 0.415 6.880 4.980 0.540 7.980 10.600 5.980
S3 4.450 0.519 0.693 2.430 3.530 0.712 9.730 5.980 4.500

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 335 0.33103
TAR Ty1-RT TAR Ty1-RT 1 0.00099

clusters connected through mates:

Cluster Number of shared
read pairs		 k
414 6 0.069
3050 4 0.0519
4150 4 0.053
9180 3 0.04
17900 3 0.0403
18100 3 0.0403
1930 2 0.026
44200 2 0.027
52000 2 0.027
53100 2 0.027
62600 2 0.027
3 1 0.000346
6 1 0.000368
14 1 0.000595
20 1 0.00102
71 1 0.000999
90 1 0.00134
95 1 0.00161
1310 1 0.0126
5940 1 0.0136
8980 1 0.0133
18900 1 0.0134
23200 1 0.0135
41900 1 0.0135
42200 1 0.0135
43000 1 0.0135
48700 1 0.0135
49800 1 0.0135
50200 1 0.0135
67000 1 0.0135
70800 1 0.0135