Cluster no. 189

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Cluster is part of supercluster: 92

Cluster characteristics:

size 1022
size_real 1022
ecount 10956
supercluster 92
annotations_summary
pair_completeness 0.594383775351014
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00391389432485323
satellite_probability 8.75468016753053e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 0
S4 0
S7 0
S9 0
S6 4
S2 343
S1 367
S3 307
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 0 0 0 0 0.0 4 2.5 2.5
S5 0.0 0 0 0 0 0.0 0 0.0 0.0
S4 0.0 0 0 0 0 0.0 0 0.0 0.0
S7 0.0 0 0 0 0 0.0 0 0.0 0.0
S9 0.0 0 0 0 0 0.0 0 0.0 0.0
S6 0.0 0 0 0 0 0.0 17 19.5 19.5
S2 4.0 0 0 0 0 17.0 1140 1310.0 1100.0
S1 2.5 0 0 0 0 19.5 1310 1410.0 1180.0
S3 2.5 0 0 0 0 19.5 1100 1180.0 1100.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 NA NA NA NA 0.000 1.370 0.776 0.894
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 0.000 NA NA NA NA 0.000 0.933 0.973 1.120
S2 1.370 NA NA NA NA 0.933 0.979 1.020 0.994
S1 0.776 NA NA NA NA 0.973 1.020 1.000 0.970
S3 0.894 NA NA NA NA 1.120 0.994 0.970 1.040

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
85 58
58 19
113 4

clusters connected through mates:

Cluster Number of shared
read pairs		 k
85 44 0.0691
58 16 0.0227
3670 4 0.03
42 3 0.00422
202 3 0.0145
8050 3 0.0227
113 2 0.00391
174 2 0.00609
6020 2 0.0151
10100 2 0.0152
12800 2 0.0152
15100 2 0.0152
24100 2 0.0153
31700 2 0.0153
41500 2 0.0153
42400 2 0.0153
7 1 0.000638
23 1 0.000793
27 1 0.000999
30 1 0.000878
50 1 0.00295
98 1 0.00184
100 1 0.00179
125 1 0.00162
129 1 0.00275
131 1 0.00213
143 1 0.00182
153 1 0.00188
183 1 0.00468
625 1 0.0069
838 1 0.00733
1290 1 0.00733
4680 1 0.00763
6860 1 0.00755
7680 1 0.00758
8720 1 0.00758
9000 1 0.00763
14600 1 0.0076
16400 1 0.0076
16900 1 0.0076
18100 1 0.0076
22800 1 0.00763
25200 1 0.00763
29800 1 0.00763
29800 1 0.00763
35900 1 0.00763
36700 1 0.00763
38500 1 0.00763
40900 1 0.00763
45500 1 0.00763
46200 1 0.00763
46900 1 0.00763
49700 1 0.00763
50800 1 0.00763
60100 1 0.00763
60600 1 0.00763
64700 1 0.00763
65300 1 0.00763

CL189 ----> CL85

image

No. of shared pairs: :44

CL189 ----> CL58

image

No. of shared pairs: :16