Cluster no. 188

Cluster no. 188

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Cluster is part of supercluster: 14

Cluster characteristics:

size	1092
size_real	1092
ecount	12303
supercluster	14
annotations_summary
pair_completeness	0.629850746268657
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0173992673992674
satellite_probability	3.63316006278968e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1
S5	3
S4	0
S7	0
S9	0
S6	4
S2	339
S1	421
S3	324

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	0.0	0	0	0	0.0	0.5	0.0	0.0
S5	0.0	0.0	0	0	0	0.0	22.5	17.0	15.0
S4	0.0	0.0	0	0	0	0.0	0.0	0.0	0.0
S7	0.0	0.0	0	0	0	0.0	0.0	0.0	0.0
S9	0.0	0.0	0	0	0	0.0	0.0	0.0	0.0
S6	0.0	0.0	0	0	0	1.0	9.0	14.5	8.5
S2	0.5	22.5	0	0	0	9.0	1420.0	1610.0	1100.0
S1	0.0	17.0	0	0	0	14.5	1610.0	1860.0	1270.0
S3	0.0	15.0	0	0	0	8.5	1100.0	1270.0	855.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.00	0.000	NA	NA	NA	0.000	2.950	0.000	0.000
S5	0.00	0.000	NA	NA	NA	0.000	1.220	0.802	1.040
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	0.00	0.000	NA	NA	NA	11.300	0.804	1.130	0.973
S2	2.95	1.220	NA	NA	NA	0.804	1.010	0.995	0.999
S1	0.00	0.802	NA	NA	NA	1.130	0.995	1.000	1.010
S3	0.00	1.040	NA	NA	NA	0.973	0.999	1.010	0.992

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

85	74
98	11
42	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

85	70	0.111
42	32	0.0454
98	8	0.0149
286	7	0.0422
547	3	0.0223
1610	3	0.0234
3300	3	0.0236
359	2	0.0142
937	2	0.0154
7870	2	0.0159
9100	2	0.016
12600	2	0.0159
14400	2	0.0159
23900	2	0.016
46600	2	0.016
60600	2	0.016
7	1	0.00064
23	1	0.000797
96	1	0.00149
108	1	0.00187
125	1	0.00164
127	1	0.00375
153	1	0.0019
1370	1	0.00763
2180	1	0.00778
4730	1	0.00787
6710	1	0.00791
7170	1	0.00791
7770	1	0.00794
10700	1	0.00794
11100	1	0.00797
13000	1	0.00797
15800	1	0.00797
19900	1	0.00803
27400	1	0.008
28000	1	0.008
32500	1	0.008
37300	1	0.008
40400	1	0.008
44200	1	0.008
44200	1	0.008
48600	1	0.008
55400	1	0.008
57300	1	0.008
65500	1	0.008

CL188 ----> CL85

No. of shared pairs: :70

CL188 ----> CL42

No. of shared pairs: :32