Cluster no. 187

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Cluster is part of supercluster: 40

Cluster characteristics:

size 1106
size_real 1106
ecount 13544
supercluster 40
annotations_summary 99.19% organelle/plastid
0.18% organelle/mitochondria
pair_completeness 0.877758913412564
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000904159132007233
satellite_probability 4.91298606542926e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 87
S5 236
S4 190
S7 85
S9 77
S6 226
S2 88
S1 59
S3 58
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 77.0 210 165 89.5 82 191 84.0 52.5 74.0
S5 210.0 651 522 206.0 194 628 202.0 182.0 170.0
S4 165.0 522 421 160.0 162 490 164.0 140.0 131.0
S7 89.5 206 160 68.0 71 188 79.5 49.5 57.5
S9 82.0 194 162 71.0 65 167 77.0 56.0 56.0
S6 191.0 628 490 188.0 167 553 201.0 164.0 138.0
S2 84.0 202 164 79.5 77 201 79.0 52.5 61.5
S1 52.5 182 140 49.5 56 164 52.5 52.0 45.5
S3 74.0 170 131 57.5 56 138 61.5 45.5 52.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.993 0.936 0.926 1.220 1.170 0.928 1.110 0.873 1.250
S5 0.936 1.000 1.010 0.973 0.953 1.060 0.923 1.050 0.987
S4 0.926 1.010 1.030 0.950 1.000 1.040 0.945 1.010 0.961
S7 1.220 0.973 0.950 0.981 1.070 0.964 1.110 0.871 1.020
S9 1.170 0.953 1.000 1.070 1.020 0.894 1.120 1.030 1.040
S6 0.928 1.060 1.040 0.964 0.894 1.010 1.000 1.030 0.873
S2 1.110 0.923 0.945 1.110 1.120 1.000 1.070 0.894 1.060
S1 0.873 1.050 1.010 0.871 1.030 1.030 0.894 1.120 0.989
S3 1.250 0.987 0.961 1.020 1.040 0.873 1.060 0.989 1.140

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 2 0.0018
plastid plastid 1097 0.9919

clusters with similarity:

Cluster Number of similarity hits
134 11

clusters connected through mates:

Cluster Number of shared
read pairs		 k
134 25 0.27
219 12 0.2
207 9 0.165
8 1 0.00054
38 1 0.00094
83 1 0.00243
164 1 0.0124
14000 1 0.0267
20900 1 0.027
22800 1 0.027

CL187 ----> CL134

image

No. of shared pairs: :25

CL187 ----> CL219

image

No. of shared pairs: :12