Cluster no. 186

Go back to cluster table

Cluster is part of supercluster: 91

Cluster characteristics:

size 1123
size_real 1123
ecount 17744
supercluster 91
annotations_summary
pair_completeness 0.683658170914543
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00356188780053428
satellite_probability 2.29499556110385e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 40
S5 316
S4 374
S7 45
S9 34
S6 314
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 71.0 8.5 10.0 49.0 53.0 10 0 0 0
S5 8.5 1780.0 2050.0 21.0 0.0 1700 0 0 0
S4 10.0 2050.0 2350.0 18.5 0.0 1950 0 0 0
S7 49.0 21.0 18.5 40.0 45.5 18 0 0 0
S9 53.0 0.0 0.0 45.5 46.0 0 0 0 0
S6 10.0 1700.0 1950.0 18.0 0.0 1600 0 0 0
S2 0.0 0.0 0.0 0.0 0.0 0 0 0 0
S1 0.0 0.0 0.0 0.0 0.0 0 0 0 0
S3 0.0 0.0 0.0 0.0 0.0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 31.000 0.135 0.138 22.500 32.3 0.167 NA NA NA
S5 0.135 1.020 1.030 0.349 0.0 1.030 NA NA NA
S4 0.138 1.030 1.020 0.268 0.0 1.030 NA NA NA
S7 22.500 0.349 0.268 19.300 29.1 0.315 NA NA NA
S9 32.300 0.000 0.000 29.100 39.1 0.000 NA NA NA
S6 0.167 1.030 1.030 0.315 0.0 1.020 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
6 4 0.00146
28 3 0.00263
39 3 0.00282
60 3 0.00275
2 2 0.00121
13 2 0.00123
15 2 0.000841
52 2 0.00304
74 2 0.00463
75 2 0.00281
259 2 0.014
1 1 0.000548
5 1 0.000509
9 1 0.00125
10 1 0.000593
20 1 0.000983
26 1 0.000969
31 1 0.00117
34 1 0.00078
35 1 0.000924
47 1 0.000947
48 1 0.000926
55 1 0.00122
61 1 0.00106
62 1 0.00191
70 1 0.00233
72 1 0.00131
87 1 0.00138
88 1 0.00132
89 1 0.00173
92 1 0.00179
95 1 0.00153
105 1 0.00159
111 1 0.00345
126 1 0.00194
135 1 0.00305
138 1 0.00324
146 1 0.0016
217 1 0.00625
251 1 0.00513
257 1 0.00651
728 1 0.00858
1070 1 0.00885
1300 1 0.00917
1710 1 0.00909
2550 1 0.00913
3140 1 0.00913
5050 1 0.00922
9410 1 0.0093
9480 1 0.0093
12300 1 0.00935
14300 1 0.00935
16100 1 0.00935
20200 1 0.00939
36700 1 0.00939
39400 1 0.00939
40900 1 0.00939
44800 1 0.00939
62700 1 0.00939
63700 1 0.00939
64000 1 0.00939