Cluster no. 185

Cluster no. 185

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Cluster is part of supercluster: 12

Cluster characteristics:

size	1129
size_real	1129
ecount	21977
supercluster	12
annotations_summary
pair_completeness	0.340855106888361
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00265721877767936
satellite_probability	9.7548493215956e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2
S5	394
S4	387
S7	0
S9	0
S6	345
S2	1
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	3.0	0.5	0	0	4	0.0	0	0
S5	3.0	2680.0	2850.0	0	0	2150	4.5	0	0
S4	0.5	2850.0	3020.0	0	0	2260	8.5	0	0
S7	0.0	0.0	0.0	0	0	0	0.0	0	0
S9	0.0	0.0	0.0	0	0	0	0.0	0	0
S6	4.0	2150.0	2260.0	0	0	1690	5.0	0	0
S2	0.0	4.5	8.5	0	0	5	0.0	0	0
S1	0.0	0.0	0.0	0	0	0	0.0	0	0
S3	0.0	0.0	0.0	0	0	0	0.0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.00	1.140	0.180	NA	NA	1.920	0.000	NA	NA
S5	1.14	0.996	1.000	NA	NA	1.010	0.714	NA	NA
S4	0.18	1.000	1.000	NA	NA	0.998	1.270	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	1.92	1.010	0.998	NA	NA	0.994	1.000	NA	NA
S2	0.00	0.714	1.270	NA	NA	1.000	0.000	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

2	188
73	134
26	65
82	56
41	19
44	1
233	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

73	108	0.124
82	68	0.0748
41	61	0.0704
26	58	0.0482
2	43	0.0236
233	33	0.0978
424	11	0.0381
19	4	0.00201
48	3	0.0024
8810	3	0.0107
6	2	0.000685
14	2	0.00106
29	2	0.00152
44	2	0.00177
88	2	0.00215
145	2	0.00493
2710	2	0.00712
60500	2	0.00718
3	1	0.000323
39	1	0.000809
55	1	0.00101
56	1	0.00111
62	1	0.00144
63	1	0.00151
67	1	0.000883
80	1	0.000983
135	1	0.002
178	1	0.00214
252	1	0.00279
771	1	0.00354
3380	1	0.00355
3480	1	0.00355
5390	1	0.00358
5890	1	0.0036
8000	1	0.00358
10900	1	0.00358
18700	1	0.0036
19500	1	0.00358
28500	1	0.00359
28900	1	0.00359
42800	1	0.00359
50200	1	0.00359
52000	1	0.00359
59400	1	0.00359
66800	1	0.00359
68400	1	0.00359

CL185 ----> CL73

No. of shared pairs: :108

CL185 ----> CL82

No. of shared pairs: :68

CL185 ----> CL41

No. of shared pairs: :61

CL185 ----> CL26

No. of shared pairs: :58

CL185 ----> CL2

No. of shared pairs: :43

CL185 ----> CL233

No. of shared pairs: :33

CL185 ----> CL424

No. of shared pairs: :11