Cluster no. 184

Cluster no. 184

Go back to cluster table

Cluster is part of supercluster: 90

Cluster characteristics:

size	1140
size_real	1140
ecount	3525
supercluster	90
annotations_summary	0.09% organelle/plastid
pair_completeness	0.353919239904988
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0280701754385965
satellite_probability	5.21895003093699e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	356
S4	339
S7	1
S9	1
S6	437
S2	2
S1	3
S3	1

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0.0	0.0	0.0	0.0	0.0	0	0.0	0.0
S5	0	370.0	319.0	1.5	1.0	401.0	1	2.0	0.0
S4	0	319.0	344.0	0.5	1.5	398.0	2	5.0	0.0
S7	0	1.5	0.5	0.0	0.0	1.0	0	0.0	0.0
S9	0	1.0	1.5	0.0	0.0	1.0	0	0.0	0.0
S6	0	401.0	398.0	1.0	1.0	526.0	2	4.5	1.5
S2	0	1.0	2.0	0.0	0.0	2.0	0	0.0	0.0
S1	0	2.0	5.0	0.0	0.0	4.5	0	0.0	0.0
S3	0	0.0	0.0	0.0	0.0	1.5	0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	1.090	0.959	1.610	0.919	0.967	0.644	0.56	0.00
S4	NA	0.959	1.060	0.549	1.410	0.982	1.320	1.43	0.00
S7	NA	1.610	0.549	0.000	0.000	0.880	0.000	0.00	0.00
S9	NA	0.919	1.410	0.000	0.000	0.754	0.000	0.00	0.00
S6	NA	0.967	0.982	0.880	0.754	1.040	1.060	1.03	2.64
S2	NA	0.644	1.320	0.000	0.000	1.060	0.000	0.00	0.00
S1	NA	0.560	1.430	0.000	0.000	1.030	0.000	0.00	0.00
S3	NA	0.000	0.000	0.000	0.000	2.640	0.000	0.00	0.00

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00088

clusters with similarity:

Cluster	Number of similarity hits

19	23
25	15
66	15
13	11
55	4
82	3
56	2
15	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

19	83	0.0419
25	52	0.0507
56	31	0.0347
13	29	0.0162
66	29	0.0273
82	8	0.00885
843	7	0.0249
55	6	0.00607
1170	6	0.0214
20	4	0.00338
3	2	0.000647
39	2	0.00163
6450	2	0.00729
7660	2	0.00733
8440	2	0.0073
14	1	0.000532
29	1	0.000763
34	1	0.00069
41	1	0.00116
67	1	0.000887
72	1	0.00107
80	1	0.000988
86	1	0.00129
100	1	0.00143
141	1	0.00223
178	1	0.00217
369	1	0.00323
2100	1	0.0036
2490	1	0.00362
3560	1	0.00364
5400	1	0.00364
9560	1	0.00365
10300	1	0.00366
12100	1	0.00366
20700	1	0.00366
24600	1	0.00366
37000	1	0.00366
52100	1	0.00366
58000	1	0.00366
62300	1	0.00366
63200	1	0.00366

CL184 ----> CL19

No. of shared pairs: :83

CL184 ----> CL25

No. of shared pairs: :52

CL184 ----> CL56

No. of shared pairs: :31

CL184 ----> CL13

No. of shared pairs: :29

CL184 ----> CL66

No. of shared pairs: :29