Cluster no. 183

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Cluster is part of supercluster: 89

Cluster characteristics:

size	1141
size_real	1141
ecount	10055
supercluster	89
annotations_summary	25.94% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 11.22% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 8.94% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 6.13% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 5.52% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 1.67% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT 0.18% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT 0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
pair_completeness	0.744648318042813
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000876424189307625
satellite_probability	8.20691448488047e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2
S5	0
S4	0
S7	0
S9	3
S6	0
S2	370
S1	376
S3	390

comparative analysis - number of edges between species:

	S8	S9	S2	S1	S3
S8	0.0	0.0	4.5	8	10.5
S5	0.0	0.0	0.0	0	0.0
S4	0.0	0.0	0.0	0	0.0
S7	0.0	0.0	0.0	0	0.0
S9	0.0	1.0	4.5	4	5.0
S6	0.0	0.0	0.0	0	0.0
S2	4.5	4.5	1160.0	1130	1050.0
S1	8.0	4.0	1130.0	1130	1090.0
S3	10.5	5.0	1050.0	1090	1150.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	NA	NA	NA	0.000	NA	0.588	1.040	1.390
S5	NA	NA	NA	NA	NA	NA	NA	NA	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	0.000	NA	NA	NA	47.800	NA	0.932	0.825	1.050
S6	NA	NA	NA	NA	NA	NA	NA	NA	NA
S2	0.588	NA	NA	NA	0.932	NA	1.040	1.010	0.953
S1	1.040	NA	NA	NA	0.825	NA	1.010	1.010	0.987
S3	1.390	NA	NA	NA	1.050	NA	0.953	0.987	1.060

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-CHDII Tekay Ty3-CHDII 63 0.05521

Reina Ty3-GAG Reina Ty3-GAG 1 0.00088

Tekay Ty3-GAG Tekay Ty3-GAG 70 0.06135

Tekay Ty3-INT Tekay Ty3-INT 296 0.25942

Reina Ty3-PROT Reina Ty3-PROT 2 0.00175

Tekay Ty3-PROT Tekay Ty3-PROT 19 0.01665

Tekay Ty3-RH Tekay Ty3-RH 128 0.11218

Tekay Ty3-RT Tekay Ty3-RT 102 0.08940

clusters with similarity:

Cluster	Number of similarity hits

42	23
85	14
62	3
86	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

42	36	0.0541
85	18	0.0305
691	10	0.107
1100	5	0.0565
5930	5	0.0581
7790	4	0.0468
2020	3	0.0339
3700	3	0.0349
4440	3	0.0347
30	2	0.00183
3790	2	0.023
7	1	0.000657
21	1	0.00178
23	1	0.000823
96	1	0.00159
189	1	0.00468
403	1	0.00913
1720	1	0.0116
2690	1	0.0114
3770	1	0.0115
8410	1	0.0118
10500	1	0.0117
15200	1	0.0118
17400	1	0.0118
17900	1	0.0119
23600	1	0.0118
41200	1	0.0118
45300	1	0.0118
62700	1	0.0118

CL183 ----> CL42

No. of shared pairs: :36

CL183 ----> CL85

No. of shared pairs: :18

CL183 ----> CL691

No. of shared pairs: :10